BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36650.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901517 jgi|Araly1|901517|Al_scaffold_0004_2167 1611 0.0
> Ahg901517 jgi|Araly1|901517|Al_scaffold_0004_2167
Length=1188
Score = 1611 bits (872), Expect = 0.0
Identities = 1095/1199 (91%), Gaps = 29/1199 (2%)
Strand=Plus/Plus
Query 80 ATGGATGGTTCAGCTGGTCCAAGAGATGGAGGAGCTATGAAGCCGGTGATTTTGAGAGTT 139
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGATGGTTCA---GGTCCAAGAGATGGAGGAGCTATGAAGCCGGTGATTCTGAGAGTT 57
Query 140 TGTGTTGCTATTGTATTATCAGCAACTGGTTTGATTTTGGCTAGGTTTGTGTCTCGGAAT 199
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGTGTTGCAATTGTATTATCAGCAACTGGTTTGATTTTGGCTAGGTTTGTGTCTCGGAAT 117
Query 200 GAAGATAACGAGGTAACTTCTTCTACAAGTAATCCAGAGTCTTCTTCATCACCTAGCAGA 259
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 118 GAAGATAATGAGGTAACTTCTTCTACAAGCAATCCGGAGTCTTCTTCATCACCTAGCAGA 177
Query 260 -GAAAACGA-CGAGGAAGAAGAAGCAGAGAGTCC-GAATCAGCAGAAGCAAGAGATTCTC 316
|||| || | ||||||||||| ||||||| | | |||| || |||||||||||||||
Sbjct 178 AGAAAT-GATC-AGGAAGAAGAAACAGAGAG-CGTGGATCATCAAAAGCAAGAGATTCTC 234
Query 317 AGCTTAAAATCCAGATTCGAGGAGCTTCAAAGGAAGGAATACGAGATGGAGTTGCATTTC 376
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 235 AGTTTAAAATCCAGATTCGAGGAGCTTAAAAGGAAGGAATACGAGATGGAGTTGCAATTC 294
Query 377 GAGCGGTTTTGTAACTTGAAAGATCAAGAAGTCATGCTTATTGAGCATAAAAGCATATTG 436
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 295 GAGCGGTTTTGTAACTTGAAAGATCAAGAAGTGATGCTTATGGAGCATAAAAGCATGTTG 354
Query 437 AGTCTTGAGAAAGCTCAATTAGATTTCTTCCGTAAAGAAGTTTTAGCGATGGAGGAAGAA 496
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGTCTTGAGAAATCTCAATTAGATTTCTTCCGTAAAGAAGTTTTAGCGATGGAGGAAGAA 414
Query 497 CACAAGAGGGGTCAAGCTTTGGTGATTGTGTATCTCAAACTTG-TGGGAGAAATCCAAGA 555
|| |||||||| |||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 415 CATAAGAGGGGACAAGATTTGGTGATTGTGTATCTCAAA-TTGGTGGGAGAAATCCAAGA 473
Query 556 GTTGAGATCAGAGAATGGGTTGCTTGAGGGGAAAGCAAAGAAGCTTAGAAGAAAATCAAA 615
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 474 GTTGAGATCAGAGAATGTGTTGCTTGAGGGGAAAGCAAAGAAGCTTAGGAGAAGATCAAA 533
Query 616 GCAGTTATACCGTGTTGTCAA-CGAGA-G--CAGGAAGATTATTGGCGTGGAAAAAGAGT 671
||| |||||||| |||| ||| ||||| | ||||| |||||||||||||||||||||||
Sbjct 534 GCAATTATACCGAGTTG-CAAACGAGAAGAGCAGGAGGATTATTGGCGTGGAAAAAGAGT 592
Query 672 TCTTGAAGTGTGTTGATGAATTGGAGACGAAGAATAACATTGTGAAGGAACTTGAAGGTA 731
||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 593 TCTTGAAGTGTGTTGATGAATTGGAGACGAAGAATTACATTTTGAAAGAACTTGAAGGTG 652
Query 732 AAGTCAAAGACATGGAAGCTTACGTTGATGTGTTGCAAGAGGAAAAGGAAGAATTATTCA 791
|||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 653 AAGTTAAAGACATGAAAGCTTACGCTGATGTGCTGCAAGAGGAAAAGGAAGAATTATTCA 712
Query 792 TGAAGTCGTCAAATTCAACATCAGAGATGGTGAGTGTAGAAGATTATAGAAGGATAGTAG 851
| ||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 713 TAAAGTCTTCAAATTCAACATCAGAGATGGTGAGTCTAGAAGATTATACAAGGGTAGTAG 772
Query 852 AAGAGTACGAGGAATTAAAGAAGGATTATGCGAATGGAGTGAAGGAAGTGATTAACCTGA 911
||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 773 AAGAGTATGAGGAATTGAAGAAGGATTATGCAAATGGAGTGAAGGAAGTGATCAACCTGA 832
Query 912 GATGGAGCAATGCTTGTTTGAGACACGAGGTGATGAGAAATGGAACCAACTTTGGGGAAA 971
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct 833 GATGGAGCAATGCTTGTTTGAGACACGAGGTAATGAGAAATGGAGCCAATTTTGGGGAAA 892
Query 972 TCGTGTTTTCTCCAAATGGAAACTTGCATGAGCTGGGTTTGGAGGATGATCAAGTGGATA 1031
|| ||||||||||||||||||||||||| ||| ||||||| ||| | | ||||| |||
Sbjct 893 TCATGTTTTCTCCAAATGGAAACTTGCAAGAGATGGGTTTAGAGAACGTTCAAGCAGATG 952
Query 1032 ATGCTCTGGCATTGATGA-GAGTAGCTAATGAGCAACATGAAGA--G--A-A-TCATCAT 1084
||||| |||||||||| | |||||| ||||| |||||||||| | | | | |||||
Sbjct 953 CTGCTCAGGCATTGATGTCG-GTAGCTTATGAGAAACATGAAGATTGTCACAATAATCAT 1011
Query 1085 CAGCATGAATCTTCGAGGAGGAAGAGATTGAtgaagaagttgaagaaatgggttgaagga 1144
|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1012 CATCATGAATCTTCGAGGAGGAAGAGGTTGATGAAGAAGCTGAAGAAATGGGTTGAAGGA 1071
Query 1145 aatgagaaaggaaaatcaaaagcagaagaagcagaagaagcggaagGCACTATTTGACAG 1204
|||||||| ||||||||||||||||| ||| ||| | |||||| |||| ||||||||
Sbjct 1072 AATGAGAAGGGAAAATCAAAAGCAGAGGAA--AGATGTTTCGGAAGACACTCTTTGACAG 1129
Query 1205 TGGAACCTGAAGAAGAACG-A-AC-ATTTCATTCAAGAAGGTCTTGTTCTAGTGTGTAA 1260
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1130 TGGAACCTGAAGAAGAACGTATATTATTTCATTCAAGAAGGTCTTGTTCTAGTGTGTAA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5