BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36670.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482645 jgi|Araly1|482645|fgenesh2_kg.4__1705__AT2G36670.1 2730 0.0
> Ahg482645 jgi|Araly1|482645|fgenesh2_kg.4__1705__AT2G36670.1
Length=1800
Score = 2730 bits (1478), Expect = 0.0
Identities = 1723/1835 (94%), Gaps = 42/1835 (2%)
Strand=Plus/Plus
Query 14 tctctctctctctctgacagttctttctgtctctctctctGCTCGATGCGAAGAATCGAG 73
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTGACAGTTCTTTTTGTCTCTCTCTCTGCTCGATGCGAAGAATCGAG 60
Query 74 CATTTGTGTCGCTCTCTGGAACGTGTGTCTTC-ATCGGGAATATAACCATAATCTCCACG 132
|||||||||||||||||| ||||| || | || ||| |||||||||||| |||||| |||
Sbjct 61 CATTTGTGTCGCTCTCTGTAACGTCTGGC-TCTATCAGGAATATAACCAGAATCTCAACG 119
Query 133 AGCTGCTTGAATGCGTACCCTTCGTTCCCTAATGTTGGCGGCGGC-TCTAGCAGTGGCTT 191
||||||||||||||||| | |||||||||| |||||||||| ||| | |||| |||||||
Sbjct 120 AGCTGCTTGAATGCGTATCTTTCGTTCCCTGATGTTGGCGGTGGCGT-TAGCGGTGGCTT 178
Query 192 TGGCCGTGACTG-GTTTTGCAGCATCGCCGTTACCTTCGGCCTATGCGAAATACGCAGCT 250
|||||||||||| | | | ||||||||||||||||||||| || ||||||||||||||||
Sbjct 179 TGGCCGTGACTGAGCTCT-CAGCATCGCCGTTACCTTCGGTCTTTGCGAAATACGCAGCT 237
Query 251 GGTCCGACCAAGATTCTTCCTTTACAAAGGGCTTTTCCTCTAGACGAGCTAGTGGAGCTG 310
|||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 238 GGTCCGGCCAAGATTCTTCCTTTACAAAGGGCTTTTCCACTAGACGAGCCAGTGGAGCTG 297
Query 311 AGTGAACTTAGAGCGCGTGATCGTGTCAGACACGCGCGAATCTTACTCGGCGGTGGTCGT 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTGAACTTAGAGCGCGTGATCGTGTCAGACACGCGCGAATCTTACTCGGCGGTGGTCGT 357
Query 371 CAGAGCTCTGTTGGCGGCGTCGTCGACTTCCCAGTTCAAGGCTCTTCCGATCCTTACCTC 430
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 358 CAGAGCTCTGTTGGCGGCGTCGTCGACTTCCCAGTTCAAGGCTCCTCCGATCCTTA-C-C 415
Query 431 GTCGGCTCCAAGATGACTATGCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACA 490
|| | | || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 416 -TC-G-T---AG--G-----GCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACA 462
Query 491 GAGTTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC 550
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GAATTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC 522
Query 551 AGTAATTGCCCTCACTCTAGTGGACTTGGAATCGACCTTCATTTCTTTGATGCTCCTGGT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AGTAATTGCCCTCACTCTAGTGGACTTGGAATCGACCTTCATTTCTTTGATGCTCCTGGT 582
Query 611 TCCTTGACTGCTGGCTCTGTTACTTGTTCAGATCCGATTTGTTCTTCAGTTTTTCAGACG 670
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TCCTTCACTGCTGGCTCTGTTACTTGTTCAGATCCGATTTGTTCTTCAGTTTTTCAGACG 642
Query 671 ACAGCTGCACAATGTTCTGAGAATAACCAGTGTGGTTACTCCTTTCGCTATGGCGATGGA 730
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACAGCTGCTCAATGTTCTGAGAATAACCAGTGTGGTTACTCCTTTCGCTATGGCGATGGA 702
Query 731 AGTGGGACTTCAGGTTACTACATGACTGACACCTTCTATTTTGATGCGATTTTGGGAGAG 790
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 703 AGTGGGACTTCAGGTTACTACATGACTGACACGTTCTATTTTGATGCGATTTTGGGAGAG 762
Query 791 TCTTTGGTTGCAAACTCATCTGCTCCCATTGTTTTCGGCTGTAGTACCTACCAATCTGGG 850
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 763 TCTTTGGTTGCAAACTCATCTGCTCCCATTGTTTTTGGCTGTAGTACCTACCAGTCCGGG 822
Query 851 GACTTGACAAAGTCAGACAAAGCAGTGGATGGAATCTTTGGTTTCGGCAAGGGAAAGTTG 910
|||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 823 GACTTGACAAAGTCAGACAAAGCAGTCGATGGTATATTTGGATTCGGCAAGGGAAAGTTG 882
Query 911 TCAGTTGTCTCTCAGTTGTCATCACGAGGGATTACGCCGCCAGTGTTTTCTCATTGCTTG 970
|| ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 883 TCCGTTGTTTCTCAATTGTCGTCAAGAGGGATTACGCCGCCAGTGTTTTCTCATTGCTTG 942
Query 971 AAAGGAGATGGTAGTGGAGGTGGTGTCTTTGTCCTTGGCGAGATATTGGTCCCAGGAATG 1030
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 943 AAAGGAGATGGTAGTGGAGGTGGTGTATTTGTCCTTGGCGAGATATTGGTCCCAGGAATG 1002
Query 1031 GTTTACAGTCCTCTCGTTCCATCACAACCTCACTATAACTTAAATCTGCTGAGCATTGGC 1090
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1003 GTTTACAGTCCTCTCGTTCCATCACAGCCTCACTATAACTTAAATCTGCTGAGCATTGGC 1062
Query 1091 GTGAATGGACAGATGCTGC-CACTCGATGCAGCGGTGTTTGAAGCATCAAATACCCGTGG 1149
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1063 GTGAATGGACAGATGCTGCTCA-TCGATGCAGCGGTGTTTGAAGCATCAAATACCCGTGG 1121
Query 1150 AACTATTGTTGACACAGGAACCACTTTGACATATCTGGTGAAAGAGGCTTATGATCTTTT 1209
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||
Sbjct 1122 AACTATTGTTGACACGGGAACCACATTGACATATCTGGTGAAAGAGGCTTATGACCCTTT 1181
Query 1210 TCTCAATGCTATATCAAACAGCGTGTCACAGTTGGTAACACCAATAATTTCTAATGGAGA 1269
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1182 TCTCAATGCTATATCAAACAGCGTGTCACAGTTGGTCACACCGATCATTTCTAATGGAGA 1241
Query 1270 GCAGTGCTATTTGGTCTCGACTAGCATAAGTGACATGTTTCCTTCAGTTAGTCTCAACTT 1329
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1242 GCAGTGCTATTTGGTCTCGACTAGCATAAGTGACATGTTTCCTCCAGTTAGTCTCAACTT 1301
Query 1330 TGCTGGTGGTGCATCAATGATGTTAAGACCTCAGGACTACTTATTTCATTACGGTATCTA 1389
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct 1302 TGCTGGTGGTGCATCAATGATGTTAAGGCCTCAGGACTACTTATTTCATTATGGTTTCTA 1361
Query 1390 TGATGGTGCGTCCATGTGGTGCATTGGTTTTCAGAAAGCTCCGGAAGAACAAACCATTTT 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 TGATGGTGCGTCCATGTGGTGCATTGGTTTTCAGAAAGCTCCGGAAGAACAAACCATTTT 1421
Query 1450 AGGAGATCTTGTGCTTAAAGATAAAGTCTTTGTATATGATCTTGCTCGACAACGGATTGG 1509
|||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 1422 AGGAGATCTTGTACTTAAAGACAAAGTCTTTGTGTATGATCTTGCTCGGCAACGGATTGG 1481
Query 1510 ATGGGCAAGCTATGATTGTTCAATGTCTGTGAATGTATCGATAACTTCAGGAAAGGATAT 1569
|||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1482 ATGGGCAAACTATGATTGTTCGATGTCTGTGAATGTATCGGTAACTTCAGGAAAGGATAT 1541
Query 1570 TGTAAACTCAGGGCAGCCATGTTTGAACATCTCAACAAGAGACATACTCATACGATTATT 1629
|||||||||||| ||||||||||||||||||||||||||||| |||||| || |||| ||
Sbjct 1542 TGTAAACTCAGGCCAGCCATGTTTGAACATCTCAACAAGAGAAATACTCTTAAGATTCTT 1601
Query 1630 CTTTAGCATCTTATTTGG-TTTACTTCTTTGTATCTTCTTCTCCTTGACGTAAATTGATA 1688
||||||||||||| | || ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1602 CTTTAGCATCTTAGT-GGCTTTACTTCTTTGTATTTTCTTCTCCTTGACGTAAATTTATA 1660
Query 1689 GA-TTATGTGGGTTTGTTTTAGAGTAGTGTAGTAGTAGTGCCTTTTAACTGTAGATCAGT 1747
|| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1661 GAATT-TGTGGGTTTGTTTTAGAGTAGTGTAGTAATAGTGCCTTTTAATTGTAGATCAGT 1719
Query 1748 CTCATTGTGAAGGAA-TATGGTTACTTGTGGCCTATAACTATAATATTGCAGGCATGAAT 1806
||||||||||||||| ||||||||||||| | | |||||||| ||||||| | ||
Sbjct 1720 CTCATTGTGAAGGAAATATGGTTACTTGT-----A-A-CTATAATACTGCAGGCCT-AA- 1770
Query 1807 GATGAAACGACAATTACCAAAGCAAATCATTTTAG 1841
| | |||||||||| ||||||||||| |||||
Sbjct 1771 -A--A--CGACAATTACTAAAGCAAATCAGTTTAG 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5