BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36670.1 Length=1842 Score E Sequences producing significant alignments: (Bits) Value Ahg482645 jgi|Araly1|482645|fgenesh2_kg.4__1705__AT2G36670.1 2730 0.0 > Ahg482645 jgi|Araly1|482645|fgenesh2_kg.4__1705__AT2G36670.1 Length=1800 Score = 2730 bits (1478), Expect = 0.0 Identities = 1723/1835 (94%), Gaps = 42/1835 (2%) Strand=Plus/Plus Query 14 tctctctctctctctgacagttctttctgtctctctctctGCTCGATGCGAAGAATCGAG 73 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTCTCTCTGACAGTTCTTTTTGTCTCTCTCTCTGCTCGATGCGAAGAATCGAG 60 Query 74 CATTTGTGTCGCTCTCTGGAACGTGTGTCTTC-ATCGGGAATATAACCATAATCTCCACG 132 |||||||||||||||||| ||||| || | || ||| |||||||||||| |||||| ||| Sbjct 61 CATTTGTGTCGCTCTCTGTAACGTCTGGC-TCTATCAGGAATATAACCAGAATCTCAACG 119 Query 133 AGCTGCTTGAATGCGTACCCTTCGTTCCCTAATGTTGGCGGCGGC-TCTAGCAGTGGCTT 191 ||||||||||||||||| | |||||||||| |||||||||| ||| | |||| ||||||| Sbjct 120 AGCTGCTTGAATGCGTATCTTTCGTTCCCTGATGTTGGCGGTGGCGT-TAGCGGTGGCTT 178 Query 192 TGGCCGTGACTG-GTTTTGCAGCATCGCCGTTACCTTCGGCCTATGCGAAATACGCAGCT 250 |||||||||||| | | | ||||||||||||||||||||| || |||||||||||||||| Sbjct 179 TGGCCGTGACTGAGCTCT-CAGCATCGCCGTTACCTTCGGTCTTTGCGAAATACGCAGCT 237 Query 251 GGTCCGACCAAGATTCTTCCTTTACAAAGGGCTTTTCCTCTAGACGAGCTAGTGGAGCTG 310 |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 238 GGTCCGGCCAAGATTCTTCCTTTACAAAGGGCTTTTCCACTAGACGAGCCAGTGGAGCTG 297 Query 311 AGTGAACTTAGAGCGCGTGATCGTGTCAGACACGCGCGAATCTTACTCGGCGGTGGTCGT 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AGTGAACTTAGAGCGCGTGATCGTGTCAGACACGCGCGAATCTTACTCGGCGGTGGTCGT 357 Query 371 CAGAGCTCTGTTGGCGGCGTCGTCGACTTCCCAGTTCAAGGCTCTTCCGATCCTTACCTC 430 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 358 CAGAGCTCTGTTGGCGGCGTCGTCGACTTCCCAGTTCAAGGCTCCTCCGATCCTTA-C-C 415 Query 431 GTCGGCTCCAAGATGACTATGCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACA 490 || | | || | |||||||||||||||||||||||||||||||||||||||| Sbjct 416 -TC-G-T---AG--G-----GCTTTATTTCACAAAGGTCAAATTAGGTTCTCCTCCTACA 462 Query 491 GAGTTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC 550 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 463 GAATTCAATGTTCAGATTGATACTGGAAGTGACATCTTGTGGGTTACTTGTAGTTCTTGC 522 Query 551 AGTAATTGCCCTCACTCTAGTGGACTTGGAATCGACCTTCATTTCTTTGATGCTCCTGGT 610 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 AGTAATTGCCCTCACTCTAGTGGACTTGGAATCGACCTTCATTTCTTTGATGCTCCTGGT 582 Query 611 TCCTTGACTGCTGGCTCTGTTACTTGTTCAGATCCGATTTGTTCTTCAGTTTTTCAGACG 670 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 TCCTTCACTGCTGGCTCTGTTACTTGTTCAGATCCGATTTGTTCTTCAGTTTTTCAGACG 642 Query 671 ACAGCTGCACAATGTTCTGAGAATAACCAGTGTGGTTACTCCTTTCGCTATGGCGATGGA 730 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 ACAGCTGCTCAATGTTCTGAGAATAACCAGTGTGGTTACTCCTTTCGCTATGGCGATGGA 702 Query 731 AGTGGGACTTCAGGTTACTACATGACTGACACCTTCTATTTTGATGCGATTTTGGGAGAG 790 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 703 AGTGGGACTTCAGGTTACTACATGACTGACACGTTCTATTTTGATGCGATTTTGGGAGAG 762 Query 791 TCTTTGGTTGCAAACTCATCTGCTCCCATTGTTTTCGGCTGTAGTACCTACCAATCTGGG 850 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| Sbjct 763 TCTTTGGTTGCAAACTCATCTGCTCCCATTGTTTTTGGCTGTAGTACCTACCAGTCCGGG 822 Query 851 GACTTGACAAAGTCAGACAAAGCAGTGGATGGAATCTTTGGTTTCGGCAAGGGAAAGTTG 910 |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| Sbjct 823 GACTTGACAAAGTCAGACAAAGCAGTCGATGGTATATTTGGATTCGGCAAGGGAAAGTTG 882 Query 911 TCAGTTGTCTCTCAGTTGTCATCACGAGGGATTACGCCGCCAGTGTTTTCTCATTGCTTG 970 || ||||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 883 TCCGTTGTTTCTCAATTGTCGTCAAGAGGGATTACGCCGCCAGTGTTTTCTCATTGCTTG 942 Query 971 AAAGGAGATGGTAGTGGAGGTGGTGTCTTTGTCCTTGGCGAGATATTGGTCCCAGGAATG 1030 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 943 AAAGGAGATGGTAGTGGAGGTGGTGTATTTGTCCTTGGCGAGATATTGGTCCCAGGAATG 1002 Query 1031 GTTTACAGTCCTCTCGTTCCATCACAACCTCACTATAACTTAAATCTGCTGAGCATTGGC 1090 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1003 GTTTACAGTCCTCTCGTTCCATCACAGCCTCACTATAACTTAAATCTGCTGAGCATTGGC 1062 Query 1091 GTGAATGGACAGATGCTGC-CACTCGATGCAGCGGTGTTTGAAGCATCAAATACCCGTGG 1149 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1063 GTGAATGGACAGATGCTGCTCA-TCGATGCAGCGGTGTTTGAAGCATCAAATACCCGTGG 1121 Query 1150 AACTATTGTTGACACAGGAACCACTTTGACATATCTGGTGAAAGAGGCTTATGATCTTTT 1209 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||| Sbjct 1122 AACTATTGTTGACACGGGAACCACATTGACATATCTGGTGAAAGAGGCTTATGACCCTTT 1181 Query 1210 TCTCAATGCTATATCAAACAGCGTGTCACAGTTGGTAACACCAATAATTTCTAATGGAGA 1269 |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 1182 TCTCAATGCTATATCAAACAGCGTGTCACAGTTGGTCACACCGATCATTTCTAATGGAGA 1241 Query 1270 GCAGTGCTATTTGGTCTCGACTAGCATAAGTGACATGTTTCCTTCAGTTAGTCTCAACTT 1329 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1242 GCAGTGCTATTTGGTCTCGACTAGCATAAGTGACATGTTTCCTCCAGTTAGTCTCAACTT 1301 Query 1330 TGCTGGTGGTGCATCAATGATGTTAAGACCTCAGGACTACTTATTTCATTACGGTATCTA 1389 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| Sbjct 1302 TGCTGGTGGTGCATCAATGATGTTAAGGCCTCAGGACTACTTATTTCATTATGGTTTCTA 1361 Query 1390 TGATGGTGCGTCCATGTGGTGCATTGGTTTTCAGAAAGCTCCGGAAGAACAAACCATTTT 1449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1362 TGATGGTGCGTCCATGTGGTGCATTGGTTTTCAGAAAGCTCCGGAAGAACAAACCATTTT 1421 Query 1450 AGGAGATCTTGTGCTTAAAGATAAAGTCTTTGTATATGATCTTGCTCGACAACGGATTGG 1509 |||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 1422 AGGAGATCTTGTACTTAAAGACAAAGTCTTTGTGTATGATCTTGCTCGGCAACGGATTGG 1481 Query 1510 ATGGGCAAGCTATGATTGTTCAATGTCTGTGAATGTATCGATAACTTCAGGAAAGGATAT 1569 |||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 1482 ATGGGCAAACTATGATTGTTCGATGTCTGTGAATGTATCGGTAACTTCAGGAAAGGATAT 1541 Query 1570 TGTAAACTCAGGGCAGCCATGTTTGAACATCTCAACAAGAGACATACTCATACGATTATT 1629 |||||||||||| ||||||||||||||||||||||||||||| |||||| || |||| || Sbjct 1542 TGTAAACTCAGGCCAGCCATGTTTGAACATCTCAACAAGAGAAATACTCTTAAGATTCTT 1601 Query 1630 CTTTAGCATCTTATTTGG-TTTACTTCTTTGTATCTTCTTCTCCTTGACGTAAATTGATA 1688 ||||||||||||| | || ||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1602 CTTTAGCATCTTAGT-GGCTTTACTTCTTTGTATTTTCTTCTCCTTGACGTAAATTTATA 1660 Query 1689 GA-TTATGTGGGTTTGTTTTAGAGTAGTGTAGTAGTAGTGCCTTTTAACTGTAGATCAGT 1747 || || |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1661 GAATT-TGTGGGTTTGTTTTAGAGTAGTGTAGTAATAGTGCCTTTTAATTGTAGATCAGT 1719 Query 1748 CTCATTGTGAAGGAA-TATGGTTACTTGTGGCCTATAACTATAATATTGCAGGCATGAAT 1806 ||||||||||||||| ||||||||||||| | | |||||||| ||||||| | || Sbjct 1720 CTCATTGTGAAGGAAATATGGTTACTTGT-----A-A-CTATAATACTGCAGGCCT-AA- 1770 Query 1807 GATGAAACGACAATTACCAAAGCAAATCATTTTAG 1841 | | |||||||||| ||||||||||| ||||| Sbjct 1771 -A--A--CGACAATTACTAAAGCAAATCAGTTTAG 1800 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69171884920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5