BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36680.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901520 jgi|Araly1|901520|Al_scaffold_0004_2170 989 0.0
> Ahg901520 jgi|Araly1|901520|Al_scaffold_0004_2170
Length=648
Score = 989 bits (535), Expect = 0.0
Identities = 618/657 (94%), Gaps = 9/657 (1%)
Strand=Plus/Plus
Query 121 ATGTTCAATTTCTGGGGATCAAAAGAACAGCAACAAGGACAATCTCGTCCTTCTCCAGAA 180
||||||||||||||||||||||||||||| |||||||| | | | |||||||||
Sbjct 1 ATGTTCAATTTCTGGGGATCAAAAGAACAACAACAAGGGC-A----G----TCTCCAGAA 51
Query 181 GCTTCTGCAACACCGTGGTATTCGCCGTCTCTTGTCACCTCTCCTAGCTCATCCCGGCCT 240
|| |||||||||||||||||||| || ||||| ||||| || ||||||||||| ||| ||
Sbjct 52 GCGTCTGCAACACCGTGGTATTCACCATCTCTGGTCACTTCGCCTAGCTCATCTCGGTCT 111
Query 241 CAAACCTCAGGGCAGATTCCATCACATGTTTCACCAGGTGAAGCCGCCGGCATTATTGCC 300
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 112 CAAACATCAGGGCAGATTCCGCCACATGTTTCACCAGGGGAAGCCGCCGGCATTATTGCC 171
Query 301 ATTTTAAAAGACAAAAGTGTGGATGAGCTTAGGAAGCTTCTCTCTGACAAGGATGCGTAT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 172 ATTTTAAAAGACAAAAGTGTGGATGAGCTTAGGAAGCTTCTGTCTGACAAGGATGCGTAT 231
Query 361 CAACAGTTTCTGCACTCGCTTGACCAGGTCACTATTCAAAACAATATCAGAGAAGAGCTT 420
||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 232 CAACAGTTTTTACAGTCGCTTGACCAGGTCACTATTCAAAACAATATAAGAGAAGAGCTT 291
Query 421 CGCAAAGAAACGTTACATCTAGCTAGAGAAAACTTGGAGAAGGAACCACAGATAGTGGAG 480
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CGCAAAGAAACATTGCATCTAGCTAGAGAAAACTTGGAGAAGGAACCACAGATAGTGGAG 351
Query 481 CTCAGAAACCAATGCAGAATAATCCGTACATCCGAGCTTGCGACTGCTCAAGAGAAGCTC 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 352 CTCAGAAACCAATGCAGAATAATCCGGACATCCGAGCTTGCGACTGCTCAAGAGAGGCTC 411
Query 541 AATGAGCTTGAGAATCAAAGAGAAGAGATCCTCAAATTCTACTCTCCAGGTTCTCTTCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AATGAGCTTGAGAATCAAAGAGAAGAGATCCTCAAATTCTACTCTCCAGGTTCTCTTCTT 471
Query 601 CATAGACTTCAAGATGCTATGAACCAGGTGGATGAAGAATCAGAGGAGCTGCAACAGAAG 660
|||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||
Sbjct 472 CATAGACTTCAAGATGCTATGAACAAGGTCGATGAAGAATCCGAGGAACTGCAACAGAAG 531
Query 661 TTTATGGAGAAGGATATTGACACAGCTGCATTTGTGCAGAAATACAAAAAGCTAAGAAGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTTATGGAGAAGGATATTGACACAGCTGCATTTGTGCAGAAATACAAAAAGCTAAGAAGC 591
Query 721 AAGTATCATCGACGGGCTTTGATTCATCTCGCTGCTAAAACTTCATCTATTGGCTGA 777
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 592 AAGTATCATCGACGGGCTTTGATTCACCTCGCTGCTAAAACTTCATCTATCGGTTGA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5