BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36690.1 Length=1218 Score E Sequences producing significant alignments: (Bits) Value Ahg321374 jgi|Araly1|321374|fgenesh1_pm.C_scaffold_4001431 1190 0.0 > Ahg321374 jgi|Araly1|321374|fgenesh1_pm.C_scaffold_4001431 Length=1176 Score = 1190 bits (644), Expect = 0.0 Identities = 765/824 (93%), Gaps = 5/824 (1%) Strand=Plus/Plus Query 391 CAGGTTGTGAATCATGGGATGGAAGGAGACGTGAGCAAGAATATGATAGACGTGTGTAAG 450 ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| Sbjct 352 CAGGTTGTGAATCATGGGATGGAGGGAGATGTGAGCAAGAACATGATAGAAGTGTGTAAG 411 Query 451 AGATTCTTTGAGCTTCCGTACGAGGAGAGATCCAAGTACATGTCGTCGGACATGTCGGCT 510 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 412 AGATTCTTTGAGCTTCCGTACGAGGAGAGATCAAAGTACATGTCGTCGGACATGTCGGCT 471 Query 511 CCAGTACGATACGGCACGAGTTTCAACCAGATCAAAGACAATGTCTTTTGTTGGAGAGAC 570 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 472 CCAGTACGATACGGCACGAGTTTCAACCAGATCAAAGACAATGTATTTTGTTGGAGAGAC 531 Query 571 TTCTTGAAACTCTATGCACATCCACTCCCTGACTATCTTCCTCATTGGCCTTCTTCTCCT 630 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 532 TTCTTGAAACTCTATGCACATCCTCTCCCTGAATATCTTCCTCATTGGCCTTCTTCTCCT 591 Query 631 TCTGACTTCAGGAGTTCGGCGGCTACATACGCTAAAGAGACGAAAGAGATGTTCGAAATG 690 || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 592 TCCGACTTCAGGAGTTTGGCGGCTACCTACGCTAAAGAGACGAAAGAGATGTTCGAGATG 651 Query 691 ATGGTCAAAGCCATCTTAGAAAGTCTTGAAATTGATGGCAGTGATGAGGCGGCTAAGGAG 750 |||||||||||||||||||| |||||||||||||||||| | || ||||||||| ||||| Sbjct 652 ATGGTCAAAGCCATCTTAGAGAGTCTTGAAATTGATGGCGGCGACGAGGCGGCTGAGGAG 711 Query 751 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCACCGTGTCCGGAGCCAGAG 810 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 712 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCGCCGTGTCCGGAGCCGGAG 771 Query 811 CTGACGCTAGGGATGCCACCGCACTCAGACTACGGCTTCTTGACGCTTCTACTTCAAGAC 870 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 772 CTGACGCTAGGGATGCCACCGCACTCCGACTACGGCTTCTTGACGCTTCTCCTTCAAGAC 831 Query 871 GAAGTCGAAGGTCTTCAAATTCTGTATCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 930 || || ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 832 GACGTTGAAGGCCTTCAGATTCTGTACCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 891 Query 931 GGCTCTTTTGTTGTCAACGTAGGCGATCATCTCGAGATATTTAGCAATGGGAGGTATAAA 990 ||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||| Sbjct 892 GGCTCTTTTGTCGTCAACGTCGGTGATCATCTCGAGATATTTAGCAATGGGAGATATAAA 951 Query 991 AGCGTGCTACATAGGGTATTGGTGAACTCTACAAAACCTAGGATATCGGTGGCGTCGCTA 1050 |||||||||||||| ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 952 AGCGTGCTACATAGAGTATTGGTGAATTCCACAAAGCCTAGGATATCAGTGGCGTCGCTG 1011 Query 1051 CACAGCTTCCCTTTGACTTCTGTCGT-AAAGCCATCGCCGAAACTCGTCGATAAACATAA 1109 ||||||||||| ||||| || ||||| ||| ||||| ||||| ||||||||| ||||||| Sbjct 1012 CACAGCTTCCCCTTGACCTCCGTCGTGAAA-CCATCACCGAAGCTCGTCGATGAACATAA 1070 Query 1110 TCCATCACAGTATATGGACACTGATTTTACCACTTTTCTTC-AGTATATAACTTCTCGTG 1168 |||| | || ||||||||||||||||||||||||||||||| | ||| | | ||||| | Sbjct 1071 TCCACCTCAATATATGGACACTGATTTTACCACTTTTCTTCGA-TATGTTTCCTCTCGCG 1129 Query 1169 AACCCAAATGGAAGAATTTTCTTGAATCACGCAAGATTCACCAT 1212 |||| || |||||||||||||| ||||||||||| || |||||| Sbjct 1130 AACCTAAGTGGAAGAATTTTCTGGAATCACGCAAAAT-CACCAT 1172 Score = 429 bits (232), Expect = 2e-119 Identities = 265/281 (94%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 118 ATGTCGCCGTCAATGATAGCTCCGGTGATGGAAGAAGAGAACAAGAAATACCAAAAAGGC 177 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGTCGCCGTCAATGATAGCTCCGGTGATGGAAGAAGAGAACAAGAAATATCAAAAAGGT 60 Query 178 GTGAAACATCTTTGTGAAAATGGTCTGACCAAAGTACCAACCAAGTATATATGGCCTGAA 237 ||||||||||| ||||| | ||||||||||||||||||||| || ||||||||||||||| Sbjct 61 GTGAAACATCTCTGTGACACTGGTCTGACCAAAGTACCAACTAAATATATATGGCCTGAA 120 Query 238 CCTGACCGACCCATCTTGACAAAATCGGACAAGCTCATCAAACCAAA-CAAAAACCTAAA 296 ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| |||||| Sbjct 121 CCTGACCGACCTATCTTTACAAAATCCGACAAGCTCATTAAACCAAAACAAAA-CCTAAA 179 Query 297 GCTCCCCCTCATAGATTTCGCTGAGCTCCTTGGACCTAACCGGCCTCATGTTCTACGAAC 356 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 GCTTCCCCTCATAGATTTCGCTGAGCTCCTTGGACCTAACCGCCCTCATGTTCTACGAAC 239 Query 357 CATAGCCGAGGCCTGCAAAACCTACGGCTTCTTTCAGGTTG 397 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 240 CATAGCCGAGGCCTGCAAAACCTACGGCTTCTTCCAGGTTG 280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45480639981 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5