BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36690.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321374 jgi|Araly1|321374|fgenesh1_pm.C_scaffold_4001431 1190 0.0
> Ahg321374 jgi|Araly1|321374|fgenesh1_pm.C_scaffold_4001431
Length=1176
Score = 1190 bits (644), Expect = 0.0
Identities = 765/824 (93%), Gaps = 5/824 (1%)
Strand=Plus/Plus
Query 391 CAGGTTGTGAATCATGGGATGGAAGGAGACGTGAGCAAGAATATGATAGACGTGTGTAAG 450
||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 352 CAGGTTGTGAATCATGGGATGGAGGGAGATGTGAGCAAGAACATGATAGAAGTGTGTAAG 411
Query 451 AGATTCTTTGAGCTTCCGTACGAGGAGAGATCCAAGTACATGTCGTCGGACATGTCGGCT 510
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 412 AGATTCTTTGAGCTTCCGTACGAGGAGAGATCAAAGTACATGTCGTCGGACATGTCGGCT 471
Query 511 CCAGTACGATACGGCACGAGTTTCAACCAGATCAAAGACAATGTCTTTTGTTGGAGAGAC 570
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 472 CCAGTACGATACGGCACGAGTTTCAACCAGATCAAAGACAATGTATTTTGTTGGAGAGAC 531
Query 571 TTCTTGAAACTCTATGCACATCCACTCCCTGACTATCTTCCTCATTGGCCTTCTTCTCCT 630
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 532 TTCTTGAAACTCTATGCACATCCTCTCCCTGAATATCTTCCTCATTGGCCTTCTTCTCCT 591
Query 631 TCTGACTTCAGGAGTTCGGCGGCTACATACGCTAAAGAGACGAAAGAGATGTTCGAAATG 690
|| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 592 TCCGACTTCAGGAGTTTGGCGGCTACCTACGCTAAAGAGACGAAAGAGATGTTCGAGATG 651
Query 691 ATGGTCAAAGCCATCTTAGAAAGTCTTGAAATTGATGGCAGTGATGAGGCGGCTAAGGAG 750
|||||||||||||||||||| |||||||||||||||||| | || ||||||||| |||||
Sbjct 652 ATGGTCAAAGCCATCTTAGAGAGTCTTGAAATTGATGGCGGCGACGAGGCGGCTGAGGAG 711
Query 751 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCACCGTGTCCGGAGCCAGAG 810
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 712 TTGGAAGAGGGAAGTCAGGTGGTGGTGGTGAACTGTTATCCGCCGTGTCCGGAGCCGGAG 771
Query 811 CTGACGCTAGGGATGCCACCGCACTCAGACTACGGCTTCTTGACGCTTCTACTTCAAGAC 870
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 772 CTGACGCTAGGGATGCCACCGCACTCCGACTACGGCTTCTTGACGCTTCTCCTTCAAGAC 831
Query 871 GAAGTCGAAGGTCTTCAAATTCTGTATCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 930
|| || ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 832 GACGTTGAAGGCCTTCAGATTCTGTACCGTGACGAGTGGGTCACCGTTGATCCCATCCCT 891
Query 931 GGCTCTTTTGTTGTCAACGTAGGCGATCATCTCGAGATATTTAGCAATGGGAGGTATAAA 990
||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 892 GGCTCTTTTGTCGTCAACGTCGGTGATCATCTCGAGATATTTAGCAATGGGAGATATAAA 951
Query 991 AGCGTGCTACATAGGGTATTGGTGAACTCTACAAAACCTAGGATATCGGTGGCGTCGCTA 1050
|||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 952 AGCGTGCTACATAGAGTATTGGTGAATTCCACAAAGCCTAGGATATCAGTGGCGTCGCTG 1011
Query 1051 CACAGCTTCCCTTTGACTTCTGTCGT-AAAGCCATCGCCGAAACTCGTCGATAAACATAA 1109
||||||||||| ||||| || ||||| ||| ||||| ||||| ||||||||| |||||||
Sbjct 1012 CACAGCTTCCCCTTGACCTCCGTCGTGAAA-CCATCACCGAAGCTCGTCGATGAACATAA 1070
Query 1110 TCCATCACAGTATATGGACACTGATTTTACCACTTTTCTTC-AGTATATAACTTCTCGTG 1168
|||| | || ||||||||||||||||||||||||||||||| | ||| | | ||||| |
Sbjct 1071 TCCACCTCAATATATGGACACTGATTTTACCACTTTTCTTCGA-TATGTTTCCTCTCGCG 1129
Query 1169 AACCCAAATGGAAGAATTTTCTTGAATCACGCAAGATTCACCAT 1212
|||| || |||||||||||||| ||||||||||| || ||||||
Sbjct 1130 AACCTAAGTGGAAGAATTTTCTGGAATCACGCAAAAT-CACCAT 1172
Score = 429 bits (232), Expect = 2e-119
Identities = 265/281 (94%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 118 ATGTCGCCGTCAATGATAGCTCCGGTGATGGAAGAAGAGAACAAGAAATACCAAAAAGGC 177
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGTCGCCGTCAATGATAGCTCCGGTGATGGAAGAAGAGAACAAGAAATATCAAAAAGGT 60
Query 178 GTGAAACATCTTTGTGAAAATGGTCTGACCAAAGTACCAACCAAGTATATATGGCCTGAA 237
||||||||||| ||||| | ||||||||||||||||||||| || |||||||||||||||
Sbjct 61 GTGAAACATCTCTGTGACACTGGTCTGACCAAAGTACCAACTAAATATATATGGCCTGAA 120
Query 238 CCTGACCGACCCATCTTGACAAAATCGGACAAGCTCATCAAACCAAA-CAAAAACCTAAA 296
||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 121 CCTGACCGACCTATCTTTACAAAATCCGACAAGCTCATTAAACCAAAACAAAA-CCTAAA 179
Query 297 GCTCCCCCTCATAGATTTCGCTGAGCTCCTTGGACCTAACCGGCCTCATGTTCTACGAAC 356
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 GCTTCCCCTCATAGATTTCGCTGAGCTCCTTGGACCTAACCGCCCTCATGTTCTACGAAC 239
Query 357 CATAGCCGAGGCCTGCAAAACCTACGGCTTCTTTCAGGTTG 397
||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 CATAGCCGAGGCCTGCAAAACCTACGGCTTCTTCCAGGTTG 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5