BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36695.1
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934307 jgi|Araly1|934307|scaffold_402295.1 132 3e-30
Ahg934302 jgi|Araly1|934302|scaffold_402290.1 104 7e-22
> Ahg934307 jgi|Araly1|934307|scaffold_402295.1
Length=326
Score = 132 bits (71), Expect = 3e-30
Identities = 215/282 (76%), Gaps = 20/282 (7%)
Strand=Plus/Plus
Query 47 GATGGCT-TGTAAGAATTTGGTTGCCATTCTCATAATTGTCTCTCTCTTTGGTCTTCACC 105
||||| | || |||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 20 GATGG-TGTGCAAGAGTTTGGTTATGGTTCTCATATTTGTCTCTCTCTTTGGTCTTCACC 78
Query 106 AATGTGATGATGATCCA-CATCCCAAGGGAATAGAAAGATGTTTTAC--ACGATTTGTTG 162
||||||| ||| || | ||||| |||||||||||||||||| || | | ||| | | |
Sbjct 79 AATGTGAAGAT-ATTGATCATCCGAAGGGAATAGAAAGATGTGTT-CGGA-GATATATGG 135
Query 163 GAAAGCCATATT-CATTGGAGGATTTGTGTTGTGTCGAAGCTCC-CTGGATTTGCTTCGC 220
||||||||| | || | || ||||||||||| | |||||||| | ||||||||||| |
Sbjct 136 GAAAGCCAT-TGACAATACAGTATTTGTGTTGTATAGAAGCTCCTC-GGATTTGCTTCAC 193
Query 221 TGGC-T-ACCTTACGGA-CGAATGCATCAAGAGGTGCCCGCCTTTGCGTGAAGGAGTACC 277
| | || | | || | ||||| ||| || ||| ||||| |||| |||||| |||
Sbjct 194 ACCCCTCAC-TC-CAGAAC-AATGCCTCACGAAGTGTCCGCCACTGCGAAAAGGAGCACC 250
Query 278 ACCGTCTCCACCAC-GGCGAAAAGGAGTAGCACCGTCTCCAC 318
|| ||| | | | || |||| | |||||| ||||| ||||
Sbjct 251 GCCCTCTTCGTCGCCGGGGAAACG-AGTAGCGCCGTCCCCAC 291
> Ahg934302 jgi|Araly1|934302|scaffold_402290.1
Length=317
Score = 104 bits (56), Expect = 7e-22
Identities = 145/186 (78%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 47 GATGGCTTGTAAGAATTTGGTTGCCATTCTCATAATTGTCTCTCTCTTTGGTCTTCACCA 106
||||| ||| |||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 20 GATGGTTTGCAAGAGTTTGGTTATGGTTCTCATATTTGTCTCTCTCTTTGGTCTTCACCA 79
Query 107 ATGT-G--A--TGATGATCCAC---ATCCCAAGGGAATAGAAAGATGTTTTAC-ACGATT 157
|||| | | | || |||| | |||| || |||||||||||||||||| | ||||
Sbjct 80 ATGTCGTCAAAT-AT-ATCCTCCTGATCCGAAAGGAATAGAAAGATGTTTTGTTA-GATT 136
Query 158 TGTTGGAAAGCCATATTC-ATTGGAGGATTTGTGTTGTGTCGAAGCTCCCTGGATTTGCT 216
| | ||| |||||| ||| | ||| |||||||||| |||||| ||| | |||||||
Sbjct 137 TATGGGAGAGCCAT-TTCCAGAAGAGTTTTTGTGTTGTATCGAAGATCCTTCCATTTGCT 195
Query 217 TCGCTG 222
|| |||
Sbjct 196 TCCCTG 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19573817157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5