BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36695.1 Length=537 Score E Sequences producing significant alignments: (Bits) Value Ahg934307 jgi|Araly1|934307|scaffold_402295.1 132 3e-30 Ahg934302 jgi|Araly1|934302|scaffold_402290.1 104 7e-22 > Ahg934307 jgi|Araly1|934307|scaffold_402295.1 Length=326 Score = 132 bits (71), Expect = 3e-30 Identities = 215/282 (76%), Gaps = 20/282 (7%) Strand=Plus/Plus Query 47 GATGGCT-TGTAAGAATTTGGTTGCCATTCTCATAATTGTCTCTCTCTTTGGTCTTCACC 105 ||||| | || |||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct 20 GATGG-TGTGCAAGAGTTTGGTTATGGTTCTCATATTTGTCTCTCTCTTTGGTCTTCACC 78 Query 106 AATGTGATGATGATCCA-CATCCCAAGGGAATAGAAAGATGTTTTAC--ACGATTTGTTG 162 ||||||| ||| || | ||||| |||||||||||||||||| || | | ||| | | | Sbjct 79 AATGTGAAGAT-ATTGATCATCCGAAGGGAATAGAAAGATGTGTT-CGGA-GATATATGG 135 Query 163 GAAAGCCATATT-CATTGGAGGATTTGTGTTGTGTCGAAGCTCC-CTGGATTTGCTTCGC 220 ||||||||| | || | || ||||||||||| | |||||||| | ||||||||||| | Sbjct 136 GAAAGCCAT-TGACAATACAGTATTTGTGTTGTATAGAAGCTCCTC-GGATTTGCTTCAC 193 Query 221 TGGC-T-ACCTTACGGA-CGAATGCATCAAGAGGTGCCCGCCTTTGCGTGAAGGAGTACC 277 | | || | | || | ||||| ||| || ||| ||||| |||| |||||| ||| Sbjct 194 ACCCCTCAC-TC-CAGAAC-AATGCCTCACGAAGTGTCCGCCACTGCGAAAAGGAGCACC 250 Query 278 ACCGTCTCCACCAC-GGCGAAAAGGAGTAGCACCGTCTCCAC 318 || ||| | | | || |||| | |||||| ||||| |||| Sbjct 251 GCCCTCTTCGTCGCCGGGGAAACG-AGTAGCGCCGTCCCCAC 291 > Ahg934302 jgi|Araly1|934302|scaffold_402290.1 Length=317 Score = 104 bits (56), Expect = 7e-22 Identities = 145/186 (78%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 47 GATGGCTTGTAAGAATTTGGTTGCCATTCTCATAATTGTCTCTCTCTTTGGTCTTCACCA 106 ||||| ||| |||| ||||||| |||||||| ||||||||||||||||||||||||| Sbjct 20 GATGGTTTGCAAGAGTTTGGTTATGGTTCTCATATTTGTCTCTCTCTTTGGTCTTCACCA 79 Query 107 ATGT-G--A--TGATGATCCAC---ATCCCAAGGGAATAGAAAGATGTTTTAC-ACGATT 157 |||| | | | || |||| | |||| || |||||||||||||||||| | |||| Sbjct 80 ATGTCGTCAAAT-AT-ATCCTCCTGATCCGAAAGGAATAGAAAGATGTTTTGTTA-GATT 136 Query 158 TGTTGGAAAGCCATATTC-ATTGGAGGATTTGTGTTGTGTCGAAGCTCCCTGGATTTGCT 216 | | ||| |||||| ||| | ||| |||||||||| |||||| ||| | ||||||| Sbjct 137 TATGGGAGAGCCAT-TTCCAGAAGAGTTTTTGTGTTGTATCGAAGATCCTTCCATTTGCT 195 Query 217 TCGCTG 222 || ||| Sbjct 196 TCCCTG 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19573817157 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5