BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G36710.1 Length=1423 Score E Sequences producing significant alignments: (Bits) Value Ahg482653 jgi|Araly1|482653|fgenesh2_kg.4__1713__AT2G36710.1 1943 0.0 Ahg934303 jgi|Araly1|934303|scaffold_402291.1 472 4e-132 > Ahg482653 jgi|Araly1|482653|fgenesh2_kg.4__1713__AT2G36710.1 Length=1278 Score = 1943 bits (1052), Expect = 0.0 Identities = 1195/1264 (95%), Gaps = 9/1264 (1%) Strand=Plus/Plus Query 41 TTATCTTAAACATGCCCATCAAACCGGTTTTAACCACCCTAATAGCTCTTTTATCCATCA 100 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 24 TTATCTTAACCATGCCCATCAAACCGGTTTTAACCACTCTAATAGCTCTTTTATCCATCA 83 Query 101 TTCTTGCTCTCTACACGATCCAATTGCCATCCTCTAGATCTCTCTCTTCTATAGCTACAA 160 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 84 TTCTTGCTCTCTACACGATCCAATTTCCATCCTCTAGATCTCTCTCTTCTATAGCCACAA 143 Query 161 CTATCGGAGCATTAGCAAAATATTCAACATTTTTTGGACACAAAcaccaccatcatcacc 220 ||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||| Sbjct 144 ATATCGGAGCATTAGCAATACATTCAACATTCTATGGACACAAACACCACCATCATCACC 203 Query 221 atcaccaccatcaccatcatcattatcaccaccatGAACCAATAAAATGTTGTGAGAAAT 280 || |||||| ||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 204 AT---CACCAT---CATCATC---ATCACCACTATGAACCAATAAAATGTTGTGAGAAAT 254 Query 281 GGACGTCAAGGCTTAGACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATG 340 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 GGACGTCAAGGCTTACACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATG 314 Query 341 GTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGTTGTCCCTGATTTAAGCTCTT 400 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 315 GTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGCTGTCCCTGATTTAAGCCCTT 374 Query 401 CCAAGACTCTCATCATCGTTAATTCGGGTTCTTATAGGGAAAAGGTTACGGTTAATGAAA 460 |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 375 CCAAAACTCTCATCATCGTTAATTCGGGTTGTTATAGGGAAAAAGTTACGGTTAATGAAA 434 Query 461 ACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACG 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 435 ACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACG 494 Query 521 ACACAGCAAAATCCGCCGGAAACACTGCTGATAGCTTCTCCTTTGTAGTGTTTGCAGCTA 580 ||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 495 ACACAGCGAAATCGGCAGGAAACACTGCTGAGAGCTTCTCCTTTGTAGTGTTTGCAGCTA 554 Query 581 ACTTCACAGCTTACAACATTAGTTTCAAGAACAATGCACCAGAACCAGATCCTGGTGAAG 640 ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct 555 ACTTCACAGCTTACAACATCAGTTTCAAGAATAATGCGCCAGAACCAGATCCTGGTGAAG 614 Query 641 CTGATGCACAAGCAGTAGCTCTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTG 700 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 615 CTGATGCACAAGCAGTATCTTTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTG 674 Query 701 GATTCTATGGGGCTCAAGATACACTTCTAGATGATAAAGGAAGACATTTCTTCAAAGAGT 760 ||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || | Sbjct 675 GATTCTACGGGGCTCAAGACACGCTTCTAGATGATAAAGGAAGACATTTCTTCAACGATT 734 Query 761 GCTTCATTCAAGGGTCCATAGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATT 820 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 735 GCTTCATTCAAGGGTCCATAGATTTTATATTCGGCAATGGAAGATCACTCTACAAGGATT 794 Query 821 GTACTATCAATTCAATAGCAAAGGGGAATACATCCGGAGTTACCGGATCTATCACAGCTC 880 |||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 795 GTACAATTAATTCAATAGCAAAGGGGAATACCTCGGGAGTTACCGGATCTATCACAGCTC 854 Query 881 AAGGAAGACAATCAGAAGATGAACAGTCAGGATTCTCTTTTGTGAATTGTAAGATCGATG 940 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 855 AAGGAAGACAATCAGAAGATGAACAGACAGGATTCTCTTTTGTGAATTGTAAGATCGCTG 914 Query 941 GCAGTGGGGAAATATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCAA 1000 | || |||||| | ||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 915 GTAGCGGGGAAGTGTTGCTTGGACGAGCTTGGGGAGCCTATGCTACTGTCGTGTTCTCAG 974 Query 1001 ATACTTACATGTCTGGAATCATTACTCCAGAAGGATGGAATAACTGGGGAGACTCGACCA 1060 | |||||||||||||||||||| | |||||||||||||||||||||||||||| || ||| Sbjct 975 ACACTTACATGTCTGGAATCATCAGTCCAGAAGGATGGAATAACTGGGGAGACCCGGCCA 1034 Query 1061 AAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAG 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1035 AAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAG 1094 Query 1121 AGAGGGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATGTAT 1180 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1095 AGAGAGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATATTT 1154 Query 1181 CTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGCATACATCTA 1240 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1155 CTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGTTTACATCTA 1214 Query 1241 AAGACATTGGAGATGATCTTATAGGATTTTACTAACATATATAAGGATACACATGAATAA 1300 |||||||| |||| |||||||| ||||||||||||| |||||||| |||||||||||||| Sbjct 1215 AAGACATTAGAGACGATCTTATCGGATTTTACTAACGTATATAAGAATACACATGAATAA 1274 Query 1301 AAAA 1304 |||| Sbjct 1275 AAAA 1278 > Ahg934303 jgi|Araly1|934303|scaffold_402291.1 Length=1157 Score = 472 bits (255), Expect = 4e-132 Identities = 686/889 (77%), Gaps = 50/889 (6%) Strand=Plus/Plus Query 312 TTCTCTTGTGTTGACTGTTGATTTGCATGGTTGTGGTAACTTCAGCAATGTTCAAAGCGC 371 |||||||||| | ||||||||| | |||| ||||||||||| ||| ||||||| ||| Sbjct 174 TTCTCTTGTGATCACTGTTGATCCGAATGGACATGGTAACTTCACCAAAGTTCAAAACGC 233 Query 372 CATTGATGTTGTCCCTGATTTAAGCTCTTCCAAGACTCTCATCATCGTTAATTC-GG-GT 429 |||||||| ||| ||||||||||||||||||||||||||||||||| | ||||| || || Sbjct 234 CATTGATGCTGTACCTGATTTAAGCTCTTCCAAGACTCTCATCATCATCAATTCAGGAGT 293 Query 430 TCTTATAGGGAAAAGGTTACGGTTAATGAAAACAAGACAAACCTTGTTATTCAAGGAAGA 489 | | | ||||||||||||| ||||| || ||||||||||||| || | || |||| ||| Sbjct 294 T-T-ACAGGGAAAAGGTTATGGTTAGTGTAAACAAGACAAACATTATGATGAAAGGCAGA 351 Query 490 GGATATCAAA-ACAC-ATCCATCGAATGGAACGACACAGCAAAATCCGCCGGAA-ACACT 546 |||||||||| | || || || || ||||| || || | || | |||| | ||| Sbjct 352 GGATATCAAAGA-ACGATT-ATTGAGTGGAATGATACTTCTCGTTCATCAGGAAGA-ACT 408 Query 547 GCT-GATAGCTTCTCCTTTG-TAGTGTTTGCAGCTAACTTCACAGCTTACAACATTAGTT 604 | ||||||| ||| |||| || | |||||||| || ||| ||||| || || || | Sbjct 409 -CAAGATAGCTACTCTTTTGGTA-TATTTGCAGCAAATTTCGTTGCTTATAATATCAGCT 466 Query 605 TCAAGAACAATGCACCAGAACCAGATCCTGGTGAAGCTGATGCACAAGCAGTAGCTC-TA 663 |||||||| |||| |||||||| || || |||| | | ||||||||| ||||| | | Sbjct 467 TCAAGAACTATGCTCCAGAACCTGAACCCGGTGTTGAAGGTGCACAAGCTGTAGC-CATT 525 Query 664 AGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTGGATTCTATGGGGCTCAAGATACA 723 || ||||| ||||| ||||| || || ||||| ||||||||||| | |||||||| || Sbjct 526 AGAATTGATGGAGATCAAGCAGCATTCTATGGGTGTGGATTCTACAGTGCTCAAGACAC- 584 Query 724 CTTCTAGATGATA--AA-GGAAGACATTTCTTCAAAG-AGTGCTTCATTCAAGGGTCCAT 779 | ||| | |||| || ||||| |||| |||||| | | ||| |||| ||||| ||||| Sbjct 585 CGTCTTG--GATAGCAATGGAAGGCATTACTTCAA-GCAATGCGTCATCCAAGGCTCCAT 641 Query 780 AGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATTGTACT-A-TCAAT-TCAAT 836 || || |||| |||||| |||||||| || || | || || || | | || || || Sbjct 642 TGACTTCATATATGGCAAAGGAAGATCGCTGTATGATGAATG--CTTAAT-AAGGTCTAT 698 Query 837 AGC-AAAGGGGAATACATCCGG-AGTTACCGGA-TCTATCACAGCTCAAGGAAGACAATC 893 ||| |||| | | ||| || || | ||| ||| || || |||||||| ||||| |||| Sbjct 699 AGCCAAAGAG-AGTACCTCAGGGA-TTAGTGGAATC-ATTACAGCTCAGGGAAGGGAATC 755 Query 894 AGAA-GATGA-ACAGTCAGGATTCTCTTT-TGTGAATTGTAAGATCGATGGCAGTGGGGA 950 | | ||||| | |||| ||||| ||||| | | || |||||||| || || | ||| | Sbjct 756 A-ATTGATGAGA-AGTCTGGATTTTCTTTCT-TAAAGTGTAAGATAGAGGGAACCGGG-A 811 Query 951 AA-TATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCA-AATACTTAC 1008 | | | |||||| || | ||| |||||||||| || || || ||||| || |||||| Sbjct 812 AGGTGTGGCTTGGGCGACCCTGGAGAGCCTATGCAACTGTGGTTTTCTCTCAA-ACTTAC 870 Query 1009 ATGTCTGGAATCAT-TACTCCAGAAGGATGGAATAACTGGGGAGA-CTCGACCAAAGAAA 1066 |||||| ||||||| | |||| || ||||||||| |||||||| | || |||| ||| | Sbjct 871 ATGTCTCGAATCATCT-CTCCCGAGGGATGGAATGACTGGGGAAATCT-GACCCGAGACA 928 Query 1067 AGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAGAGAGGG 1126 |||| ||||||||||||||||||| |||||||||| ||| | |||||||||| ||||| Sbjct 929 AGACTGTGACTTTTGGAGAGCATAGATGCTATGGAGAAGGATCTGATTACAAAGGGAGGG 988 Query 1127 TTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGA 1175 || | || ||||||||| |||||||||||||||||||| |||| ||| Sbjct 989 TTCCATATGCGAAACAACTAACAGATTCAGAAGCATCTTCATTCACAGA 1037 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53212072265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5