BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36710.1
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482653 jgi|Araly1|482653|fgenesh2_kg.4__1713__AT2G36710.1 1943 0.0
Ahg934303 jgi|Araly1|934303|scaffold_402291.1 472 4e-132
> Ahg482653 jgi|Araly1|482653|fgenesh2_kg.4__1713__AT2G36710.1
Length=1278
Score = 1943 bits (1052), Expect = 0.0
Identities = 1195/1264 (95%), Gaps = 9/1264 (1%)
Strand=Plus/Plus
Query 41 TTATCTTAAACATGCCCATCAAACCGGTTTTAACCACCCTAATAGCTCTTTTATCCATCA 100
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 24 TTATCTTAACCATGCCCATCAAACCGGTTTTAACCACTCTAATAGCTCTTTTATCCATCA 83
Query 101 TTCTTGCTCTCTACACGATCCAATTGCCATCCTCTAGATCTCTCTCTTCTATAGCTACAA 160
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 84 TTCTTGCTCTCTACACGATCCAATTTCCATCCTCTAGATCTCTCTCTTCTATAGCCACAA 143
Query 161 CTATCGGAGCATTAGCAAAATATTCAACATTTTTTGGACACAAAcaccaccatcatcacc 220
||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||
Sbjct 144 ATATCGGAGCATTAGCAATACATTCAACATTCTATGGACACAAACACCACCATCATCACC 203
Query 221 atcaccaccatcaccatcatcattatcaccaccatGAACCAATAAAATGTTGTGAGAAAT 280
|| |||||| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 204 AT---CACCAT---CATCATC---ATCACCACTATGAACCAATAAAATGTTGTGAGAAAT 254
Query 281 GGACGTCAAGGCTTAGACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATG 340
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGACGTCAAGGCTTACACACCAATACAAGACTTCTCTTGTGTTGACTGTTGATTTGCATG 314
Query 341 GTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGTTGTCCCTGATTTAAGCTCTT 400
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 315 GTTGTGGTAACTTCAGCAATGTTCAAAGCGCCATTGATGCTGTCCCTGATTTAAGCCCTT 374
Query 401 CCAAGACTCTCATCATCGTTAATTCGGGTTCTTATAGGGAAAAGGTTACGGTTAATGAAA 460
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 375 CCAAAACTCTCATCATCGTTAATTCGGGTTGTTATAGGGAAAAAGTTACGGTTAATGAAA 434
Query 461 ACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 ACAAGACAAACCTTGTTATTCAAGGAAGAGGATATCAAAACACATCCATCGAATGGAACG 494
Query 521 ACACAGCAAAATCCGCCGGAAACACTGCTGATAGCTTCTCCTTTGTAGTGTTTGCAGCTA 580
||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 495 ACACAGCGAAATCGGCAGGAAACACTGCTGAGAGCTTCTCCTTTGTAGTGTTTGCAGCTA 554
Query 581 ACTTCACAGCTTACAACATTAGTTTCAAGAACAATGCACCAGAACCAGATCCTGGTGAAG 640
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 555 ACTTCACAGCTTACAACATCAGTTTCAAGAATAATGCGCCAGAACCAGATCCTGGTGAAG 614
Query 641 CTGATGCACAAGCAGTAGCTCTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTG 700
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 615 CTGATGCACAAGCAGTATCTTTAAGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTG 674
Query 701 GATTCTATGGGGCTCAAGATACACTTCTAGATGATAAAGGAAGACATTTCTTCAAAGAGT 760
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 675 GATTCTACGGGGCTCAAGACACGCTTCTAGATGATAAAGGAAGACATTTCTTCAACGATT 734
Query 761 GCTTCATTCAAGGGTCCATAGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATT 820
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 735 GCTTCATTCAAGGGTCCATAGATTTTATATTCGGCAATGGAAGATCACTCTACAAGGATT 794
Query 821 GTACTATCAATTCAATAGCAAAGGGGAATACATCCGGAGTTACCGGATCTATCACAGCTC 880
|||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 795 GTACAATTAATTCAATAGCAAAGGGGAATACCTCGGGAGTTACCGGATCTATCACAGCTC 854
Query 881 AAGGAAGACAATCAGAAGATGAACAGTCAGGATTCTCTTTTGTGAATTGTAAGATCGATG 940
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 855 AAGGAAGACAATCAGAAGATGAACAGACAGGATTCTCTTTTGTGAATTGTAAGATCGCTG 914
Query 941 GCAGTGGGGAAATATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCAA 1000
| || |||||| | ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 915 GTAGCGGGGAAGTGTTGCTTGGACGAGCTTGGGGAGCCTATGCTACTGTCGTGTTCTCAG 974
Query 1001 ATACTTACATGTCTGGAATCATTACTCCAGAAGGATGGAATAACTGGGGAGACTCGACCA 1060
| |||||||||||||||||||| | |||||||||||||||||||||||||||| || |||
Sbjct 975 ACACTTACATGTCTGGAATCATCAGTCCAGAAGGATGGAATAACTGGGGAGACCCGGCCA 1034
Query 1061 AAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAG 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AAGAAAAGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAG 1094
Query 1121 AGAGGGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATGTAT 1180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1095 AGAGAGTTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGATATTT 1154
Query 1181 CTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGCATACATCTA 1240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1155 CTTTTATAGATGGTGATGAATGGCTCCGTCACACTAACATAGTCTCTGAGTTTACATCTA 1214
Query 1241 AAGACATTGGAGATGATCTTATAGGATTTTACTAACATATATAAGGATACACATGAATAA 1300
|||||||| |||| |||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1215 AAGACATTAGAGACGATCTTATCGGATTTTACTAACGTATATAAGAATACACATGAATAA 1274
Query 1301 AAAA 1304
||||
Sbjct 1275 AAAA 1278
> Ahg934303 jgi|Araly1|934303|scaffold_402291.1
Length=1157
Score = 472 bits (255), Expect = 4e-132
Identities = 686/889 (77%), Gaps = 50/889 (6%)
Strand=Plus/Plus
Query 312 TTCTCTTGTGTTGACTGTTGATTTGCATGGTTGTGGTAACTTCAGCAATGTTCAAAGCGC 371
|||||||||| | ||||||||| | |||| ||||||||||| ||| ||||||| |||
Sbjct 174 TTCTCTTGTGATCACTGTTGATCCGAATGGACATGGTAACTTCACCAAAGTTCAAAACGC 233
Query 372 CATTGATGTTGTCCCTGATTTAAGCTCTTCCAAGACTCTCATCATCGTTAATTC-GG-GT 429
|||||||| ||| ||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct 234 CATTGATGCTGTACCTGATTTAAGCTCTTCCAAGACTCTCATCATCATCAATTCAGGAGT 293
Query 430 TCTTATAGGGAAAAGGTTACGGTTAATGAAAACAAGACAAACCTTGTTATTCAAGGAAGA 489
| | | ||||||||||||| ||||| || ||||||||||||| || | || |||| |||
Sbjct 294 T-T-ACAGGGAAAAGGTTATGGTTAGTGTAAACAAGACAAACATTATGATGAAAGGCAGA 351
Query 490 GGATATCAAA-ACAC-ATCCATCGAATGGAACGACACAGCAAAATCCGCCGGAA-ACACT 546
|||||||||| | || || || || ||||| || || | || | |||| | |||
Sbjct 352 GGATATCAAAGA-ACGATT-ATTGAGTGGAATGATACTTCTCGTTCATCAGGAAGA-ACT 408
Query 547 GCT-GATAGCTTCTCCTTTG-TAGTGTTTGCAGCTAACTTCACAGCTTACAACATTAGTT 604
| ||||||| ||| |||| || | |||||||| || ||| ||||| || || || |
Sbjct 409 -CAAGATAGCTACTCTTTTGGTA-TATTTGCAGCAAATTTCGTTGCTTATAATATCAGCT 466
Query 605 TCAAGAACAATGCACCAGAACCAGATCCTGGTGAAGCTGATGCACAAGCAGTAGCTC-TA 663
|||||||| |||| |||||||| || || |||| | | ||||||||| ||||| | |
Sbjct 467 TCAAGAACTATGCTCCAGAACCTGAACCCGGTGTTGAAGGTGCACAAGCTGTAGC-CATT 525
Query 664 AGGATTGAAGGAGACCAAGCTGCCTTTTATGGTTGTGGATTCTATGGGGCTCAAGATACA 723
|| ||||| ||||| ||||| || || ||||| ||||||||||| | |||||||| ||
Sbjct 526 AGAATTGATGGAGATCAAGCAGCATTCTATGGGTGTGGATTCTACAGTGCTCAAGACAC- 584
Query 724 CTTCTAGATGATA--AA-GGAAGACATTTCTTCAAAG-AGTGCTTCATTCAAGGGTCCAT 779
| ||| | |||| || ||||| |||| |||||| | | ||| |||| ||||| |||||
Sbjct 585 CGTCTTG--GATAGCAATGGAAGGCATTACTTCAA-GCAATGCGTCATCCAAGGCTCCAT 641
Query 780 AGATTTTATATTTGGCAATGGAAGATCACTCTACCAGGATTGTACT-A-TCAAT-TCAAT 836
|| || |||| |||||| |||||||| || || | || || || | | || || ||
Sbjct 642 TGACTTCATATATGGCAAAGGAAGATCGCTGTATGATGAATG--CTTAAT-AAGGTCTAT 698
Query 837 AGC-AAAGGGGAATACATCCGG-AGTTACCGGA-TCTATCACAGCTCAAGGAAGACAATC 893
||| |||| | | ||| || || | ||| ||| || || |||||||| ||||| ||||
Sbjct 699 AGCCAAAGAG-AGTACCTCAGGGA-TTAGTGGAATC-ATTACAGCTCAGGGAAGGGAATC 755
Query 894 AGAA-GATGA-ACAGTCAGGATTCTCTTT-TGTGAATTGTAAGATCGATGGCAGTGGGGA 950
| | ||||| | |||| ||||| ||||| | | || |||||||| || || | ||| |
Sbjct 756 A-ATTGATGAGA-AGTCTGGATTTTCTTTCT-TAAAGTGTAAGATAGAGGGAACCGGG-A 811
Query 951 AA-TATTGCTTGGAAGAGCTTGGGGAGCCTATGCTACAGTCGTGTTCTCA-AATACTTAC 1008
| | | |||||| || | ||| |||||||||| || || || ||||| || ||||||
Sbjct 812 AGGTGTGGCTTGGGCGACCCTGGAGAGCCTATGCAACTGTGGTTTTCTCTCAA-ACTTAC 870
Query 1009 ATGTCTGGAATCAT-TACTCCAGAAGGATGGAATAACTGGGGAGA-CTCGACCAAAGAAA 1066
|||||| ||||||| | |||| || ||||||||| |||||||| | || |||| ||| |
Sbjct 871 ATGTCTCGAATCATCT-CTCCCGAGGGATGGAATGACTGGGGAAATCT-GACCCGAGACA 928
Query 1067 AGACGGTGACTTTTGGAGAGCATAAATGCTATGGACCGGGAGCAGATTACAAAGAGAGGG 1126
|||| ||||||||||||||||||| |||||||||| ||| | |||||||||| |||||
Sbjct 929 AGACTGTGACTTTTGGAGAGCATAGATGCTATGGAGAAGGATCTGATTACAAAGGGAGGG 988
Query 1127 TTTTGTTTGGGAAACAACTCACAGATTCAGAAGCATCTTCTTTCATAGA 1175
|| | || ||||||||| |||||||||||||||||||| |||| |||
Sbjct 989 TTCCATATGCGAAACAACTAACAGATTCAGAAGCATCTTCATTCACAGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53212072265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5