BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36740.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482657 jgi|Araly1|482657|fgenesh2_kg.4__1717__AT2G36740.1 2244 0.0
> Ahg482657 jgi|Araly1|482657|fgenesh2_kg.4__1717__AT2G36740.1
Length=1448
Score = 2244 bits (1215), Expect = 0.0
Identities = 1383/1461 (95%), Gaps = 23/1461 (2%)
Strand=Plus/Plus
Query 83 GCGGCGGTCGCCGGCGAAGACGTGTGCTCGTCGAAGAAACTTCTCCAACCTAAAATTTTC 142
|||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||| ||
Sbjct 1 GCGGTGGTCGCCGGCGAAGACGTATGCTCTTCGAAGAAACTTCTCCAGCCTAAAATTCTC 60
Query 143 CGAA-GAAGTAAGAGTTGAGCAAGTTATCAATGGAAATCGATGAAGAAGAGCCAATGGTG 201
||| | |||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 61 TGAAGGTAGTAAGAGGTGAGCAAGTTATCAATGGAAAGCGATAAAGAAGAGCCAATGGTG 120
Query 202 TTCTTGGACCGTACAACAAGAGCAACACGGGGTAAACGGATGACCAAGTTGCTTGATGAC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTGGACCGTACAACAAGAGCAACACGGGGTAAACGGATGACCAAGTTGCTTGATGAC 180
Query 262 GAAGTAGAAGAAGATGAACAGTTTTGGAATCAAGAAGCTCTTAAAGAGGAAGAACATGAT 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAGTAGAAGAAGATGAACAGTTTTGGAATCAAGAAGCTCTTAAAGAGGAAGAACATGAT 240
Query 322 GATGAATATGAAGCAGAACGTGAGGTTGCTGATGAGTTTGACAGTGACTTCAATGACGAT 381
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 241 GATGAATATGAAGCAGAACGTGAAGTTGCTGATGAGTTTGACAGCGACTTCAATGACGAT 300
Query 382 GAGCCTGAGCCTGATGCAGTCGCTGTAAATGAAAAAGAATTGAGGGATCTGCCAAAGAAG 441
||||| ||| |||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 301 GAGCCCGAGGCTGATGCAGTAGCTGAAAATGAAAAAGAAGAGAGGGATCTGCCAAAGAAG 360
Query 442 CGGCTGATTTACCCTGGGAAAACTGCTTCaaagaaaaagaaaaagaagaCGAAGGTAGTT 501
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 361 CGGCTGATTTACCCTGGGAAAATTGCTTCAAAGAAAAAGAAGAAGAAGACGAAGGTAGTT 420
Query 502 TC-ACAACTAGAATATATTCCTGGAGATGagaagccaggtgaagaattgggaaacaagga 560
|| | |||||||| |||||| |||| || |||||||||||||||||||||||| |||||
Sbjct 421 TCGA-AACTAGAAGATATTCGTGGAAATAAGAAGCCAGGTGAAGAATTGGGAAGTAAGGA 479
Query 561 acaagaagaaaaagaagagaatgaagcacaagaagatatggaaggtgagaaagTCATTAG 620
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 480 ACAAGACGAAAAAGAAGAGAATGAAGCACAAGAGGATATGGAAGGTGAGAAGGTCATTAG 539
Query 621 GAAATCAACACGGACTTCAGTGGTTGTACGGCAAGCAGAAAGAGATGCATTGCGTGCTGC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAAATCAACACGGACTTCAGTGGTTGTACGGCAAGCAGAAAGAGATGCATTGCGTGCTGC 599
Query 681 TATACAAGCAACAACAAAGCCAATACAAAGGAAAAAAGTAGGGGAGGAAAAACGGATGAC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATACAAGCAACAACAAAGCCAATACAAAGGAAAAAAGTAGGGGAGGAAAAACGGATGAC 659
Query 741 CCAAGAAGAAATGCTGCTGGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTAGA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCAAGAAGAAATGCTGCTGGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTAGA 719
Query 801 ACGTGTCTTGGCAAGGGAAGAAGAAGTAAAAAAGAAAGCGATTGTGCATAAAGCAGTCTA 860
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACGTGTCTTGGCTAGGGAAGAAGAAGTAAAAAAGAAAGCGATTGTGCATAAAGCAGTCTA 779
Query 861 CAAGGGTCCTCAGATTCGGTATCATTCAAAAGATGGATGTAACTATTTAGAATTCTGTAA 920
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 CAAGGGTCCTCAGATTCGGTATCATTCAAAAGATGGATGCAACTATTTAGAATTCTGTAA 839
Query 921 TGGTGCGTCATTCAATTCAGAGTTGTCGACGAAGTCTGTTCCCTATCCAGAAAAAGCTGT 980
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TGGTGCGTCGTTCAATTCAGAGTTGTCGACAAAGTCTGTTCCCTATCCAGAAAAAGCTGT 899
Query 981 ATGTGTGATTACGGGATTACCTGCCAAGTACCGGGATCCAAAAACGGGTCTTCCTTATGC 1040
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 ATGTGTGATTACAGGATTACCTGCCAAGTACCGGGATCCAAAAACTGGTCTTCCTTATGC 959
Query 1041 AACTAGAGACGCCTTCAAAGCAATACGTGAAAGGTTCATGGACGAACATGATGGTTTGAG 1100
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 960 AACTAGAGACGCCTTCAAAGCAATACGCGAAAGGTTCATGGACGAACACGATGGCTTGAG 1019
Query 1101 AAAGAAAATGGAGATGGGAGATTTGTTTGATACACTAGTGGCGAAAGGTTTTGCAACAAA 1160
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 1020 AAAGAAAATGGAGATGGGAGATTTGTTTGATACGCTAGTGGCGAAAGGTTTTACTGTGAA 1079
Query 1161 ACAAAAGAGAACGAAGATTCCAAAGAGTAACAAATCATTTTCCCTCAGAAGCTCAGCTCG 1220
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 ACAAAAGAGAACAAAGATTCCAAAGAGTAACAAATCATTTTCCCTTAGAAGCTCAGCTCG 1139
Query 1221 TTTCCTTAGCTCCGAGTCTGAAGAAGAGAGTGAAGAAGATTCAGATTAATAAACACCTCC 1280
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1140 TTTCCTTAGCTCCGAGTCTGAAGAAGAGAGTGAAGA---TTCAGATTAATAAACACATCA 1196
Query 1281 CTGATTTGAATCTGCATCTCACATGATTGTGATACATCATTCATGGATCTTCCCACGACC 1340
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 CTGATTTGAATCTGCATCTCACATGATTGTGATACAT-------GGATCTTCCCACGACC 1249
Query 1341 ATGGTTTTGGTTCTCAGAGATTAGAAGCGAGAAGAACATTCATGGAGGAAATTTTCATGA 1400
||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||
Sbjct 1250 ATGGTTTTGGTTCTCAGAGATAAGAAGAGAGAAGAACATTCTTGGAGGAAGTTTTCATGA 1309
Query 1401 TCAGAGCTTTGAAATGGAAACAACAACACTCTAATCAGAGATTGA-TCCTCCTAACCAAA 1459
||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1310 TCAGAGCTT-GAAATGGAAACAACAACACTCTAATCAGAGATTGAATCCTCCCAACCAAA 1368
Query 1460 ACCTCTGACACCCATCTCAGAATCAGAGAGAAAGTGTAATCTTCTGTATATT----A--- 1512
|||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
Sbjct 1369 ACCTCTGACACC-ATCACAGAATCAGAGAGAAAGTGTAATCTTCTATATATTGCTGAGTG 1427
Query 1513 CTGACCTTGTAAAGATGATAT 1533
|||||||||||||||||||||
Sbjct 1428 CTGACCTTGTAAAGATGATAT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5