BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36810.1
Length=5411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482661 jgi|Araly1|482661|fgenesh2_kg.4__1721__AT2G36810.1 1965 0.0
Ahg321384 jgi|Araly1|321384|fgenesh1_pm.C_scaffold_4001441 1051 0.0
> Ahg482661 jgi|Araly1|482661|fgenesh2_kg.4__1721__AT2G36810.1
Length=3174
Score = 1965 bits (1064), Expect = 0.0
Identities = 1133/1167 (97%), Gaps = 2/1167 (0%)
Strand=Plus/Plus
Query 1502 AGTACATTCTTTGGCCTTTCCTACTGAAAATGATTATCCCTAAGGTCTACACTGGCGCTG 1561
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 710 AGTACATTCTTTGGCCTTTCCTACTGAAAGTGATTGTCCCTAAGGTCTACACTGGCGCTG 769
Query 1562 TTGCATCAGTATGTAGATGCATAACTGAACTTTGTCGTCGTAGATCTTCAACCACCCCCA 1621
|||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 770 TTGCATCAGTCTGTAGATGCATATCTGAACTTTGTCGTCGTAGGTCTTCAACCACCCCCA 829
Query 1622 TGTTGATCGAGTGTAAAGCTCGTGCTGATATTCCGAACCCTGAGGAGTTGTTTACCCGTT 1681
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 830 TGTTGATCGAGTGTAAAGCTCGTGCTGACATTCCTAGCCCTGAGGAGTTGTTTACCCGTT 889
Query 1682 TGGTGGTTCTTTTGCACAACCCTCTGGCAAAAGAGCAGTTAGCATCCCAAATTTTGACGG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TGGTGGTTCTTTTGCACAACCCTCTGGCAAAAGAGCAGTTAGCATCCCAAATTTTGACGG 949
Query 1742 TCCTTGGCTATCTATCCCCTCTTTTT-CCAAAGAACATCAGCATGTTTTGGCAAGATGAG 1800
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 950 TCCTTGGCTATCTATCCCCTCTTTTTCCCAAA-AACATCAGCATGTTTTGGCAAGATGAG 1008
Query 1801 ATTCCAAAAATGAAGGCGTATGTCTATGACACAGAAGATCTGAAGCTGGATCCAACTTAC 1860
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1009 ATTCCAAAAATGAAGGCGTATGTCTTTGACACAGAAGATCTGAAGCTCGATCCAACTTAC 1068
Query 1861 CAGGAAACTTGGGATGACATGATAATCAATTTTCTAGCAGAATCATTGGATGTCACCCAG 1920
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1069 CAGGAAACTTGGGATGACATGATAATCAATTTTCTAGCAGAATCACTGGATGTTACCCAG 1128
Query 1921 GATGCTGACTGGGTTATATCTCTTGGAAATTCTTTTGCAAAACAATATATTCTTTACGCT 1980
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||
Sbjct 1129 GATGCTGACTGGGTTATATCTCTTGGAAATGCCTTTGCAAAACAATACATTCTTTACTCT 1188
Query 1981 CCGGATGATGACCATGCAGCACTTCTACACCGGTGTATCGGAATACTTCTCCAGAAAGTT 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 CCGGATGATGACCATGCAGCACTTCTACACCGGTGTATCGGAATACTTCTCCAGAAAGTT 1248
Query 2041 AATGATAGAGCATATGTTCGTGACAAGATTGACTGGATGTACGAACAGGCTGACATTTCT 2100
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1249 AATGATAGAGCATATGTTCGTGACAAGATTGACTGGATGTACGAACAGGCAGACATTTCT 1308
Query 2101 ATACCTGCAAATAGACTGGGTTTGGCGAAGGCCATGGGGCTGGTCGCGGCTTCTCACTTG 2160
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1309 ATACCTGCAAATAGACTTGGTTTAGCGAAGGCCATGGGGCTGGTCGCGGCTTCTCACTTG 1368
Query 2161 GACACTGTACTGGAAAAGCTGAAAATCATCGTGGATAATGTTGGGCAGAGTATTTTCCAA 2220
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1369 GACACTGTACTGGAAAAGCTGAAAATCATTGTGGATAATGTTGGGCAGAGTATTTTCCAA 1428
Query 2221 AGGATCTTATCTCTCTTCTCTGAGAGCTATAAAACAGAAGACAGTGATGATATACACGCT 2280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1429 AGGATCTTATCTCTCTTCTCTGAGAGCTATAAAACAGAAGACAGTGATGATATACATGCT 1488
Query 2281 GCTTTGGCTTTGATGTATGGATATGCTGCAAAATATGCACCCTCATCAGTTATTGAAGCC 2340
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1489 GCTTTGGCTTTGATGTATGGATATGCTGCAAAATATGCGCCGTCATCAGTTATTGAGGCC 1548
Query 2341 AGAATAGATGCACTTGTCGGCACCAATATGCTTTCACGGCTTCTTCATGTGCGGCAACAA 2400
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1549 AGAATAGATGCACTTGTCGGCACGAATATGCTTTCACGGCTTCTTCATGTGCGGCAGCAA 1608
Query 2401 ACAGCAAAACAAGCTGTTATAACTGCTATTGATTTATTAGGTCGTGCTGTCATAAATGCT 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1609 ACAGCAAAACAAGCTGTTATAACTGCTATTGATTTATTAGGTCGTGCTGTCATTAATGCT 1668
Query 2461 GCAGAAACTGGTGCTACATTCCCATTGAAAAGAAGAGATCAGATGCTTGATTATATATTG 2520
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GCAGAAAGTGGTGCTACATTCCCATTGAAAAGAAGAGATCAGATGCTTGATTATATATTG 1728
Query 2521 ACTTTGATGGGCCGAGATGAAAATGAAGGTTTTGCAGAATCTAGTCTCGAAGTTCTACAC 2580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 ACTTTGATGGGCCGAGATGAAAATGAAGGTTTTGCAGAATCTAGTCTCGAAGTTCTACAC 1788
Query 2581 ACTCAGGCACTCGCTCTGAATGCATGCACAACACTTGTCTCTGTGGAACCAAAGCTGACC 2640
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1789 ACTCAGGCACTTGCTCTGAATGCATGCACAACACTGGTCTCTGTGGAACCAAAGCTGACC 1848
Query 2641 ATTGAAACTCGAAATCGTGTCATGAAG 2667
||||||||||||||||||| ||||||
Sbjct 1849 GTTGAAACTCGAAATCGTGTTATGAAG 1875
Score = 1225 bits (663), Expect = 0.0
Identities = 696/712 (98%), Gaps = 2/712 (0%)
Strand=Plus/Plus
Query 754 ATGGTCGGTCTTATCACGCGGACACAACTGAAATCAGCATTACCAAGGCTTATTCCAGCA 813
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTCGGTCTTATCACGCGGACAAAACTGAAATCAGCATTACCAAGGCTTATTCCAGCA 60
Query 814 ATACTTGAACTGTATAAGAAAGATCATGATGATGCTCTTTTGGCGACATGTAGTCTTCAC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATACTTGAACTGTATAAGAAAGATCATGATGATGCTCTTTTGGCGACATGTAGTCTTCAC 120
Query 874 AACCTTTTAAATGCCTCGTTACTTTCTGAGTCTGGTCCTCCACTGCTTGATTTTGAGGAC 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACCTTTTAAATGCCTCGTTACTTTCTGAGTCTGGTCCTCCACTGCTTGATTTTGAGGAC 180
Query 934 CTCACAATTGTTCTGTCAACACTTCTTCCTGTGATCGGTATCAATAATGAAAGAAAAAGG 993
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CTCACAATTGTGCTGTCAACACTTCTTCCTGTGATCGGTATCAATAGTGAAAGAAAAAGG 240
Query 994 TTCTCAGATATTTCTGTGGGACGGAAGACATACAATGAAGTGCAGCGGTGTTTTCTGACT 1053
| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TGCTCAGATATTTCAGTGGGACGAAAGACATACAATGAAGTGCAGCGGTGTTTTCTGACT 300
Query 1054 GTTGGCTTGGTTTACCCTGAGGATTTGTTTACATTTCTTCTTAACAAATGCAAGTTGAAA 1113
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGGCTTGGTTTATCCTGAGGATTTGTTTACATTTCTTCTTAACAAATGCAAGTTGAAA 360
Query 1114 GAAGACCCTTTGACGTTTGGTGCTCTTTGCATCTTGAAACATCTGCTTCCGAGGTTGTTT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGACCCTTTGACGTTTGGTGCTCTTTGCATCTTGAAACATCTGCTTCCGAGGTTGTTT 420
Query 1174 GAAGCATGGCACTCAAAACGGCCTCTTTTGGTGGATACTGCAAGTTCTTTGTTAGATGAG 1233
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 421 GAAGCATGGCACTCAAAACGGCCTCTTTTGGTTGATACTGCAAGGTCTTTGTTAGATGAG 480
Query 1234 CAAAGTTTAGCTGTTCGAAAAGCCCTTTCAGAGTTGATCGTGGTCATGGCTTCACACTGC 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAAGTTTAGCTGTTCGAAAAGCCCTTTCAGAGTTGATCGTGGTCATGGCTTCACACTGC 540
Query 1294 TATCTGGTCGGTCCATCTGGGGAATTATTTGTTGAATACCTTGTACGCCATTCTGCAATA 1353
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATCTGGCCGGTCCATCTGGGGAATTATTTGTTGAATACCTTGTACGCCATTCTGCAATA 600
Query 1354 GGAGAGAGTGACCATCTGAAGGCAAAAGGGGAA-CTAGTTAGTCCAACACAGCTAAGAGC 1412
|||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 601 GGAGAGAGTGACGATCTGAAGGCAAAAGGGGAATC-AGTTAGTCCAACACAGCTAAGAGC 659
Query 1413 AGTTTGTGGAAAAGGTCTTCTGCTCTTGACCGTTACAATCCCAGAGATGGAG 1464
|||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 660 AGTTTGTGGAAAAGGTCTTCTGCTCTTGACTGTTACAATTCCGGAGATGGAG 711
Score = 745 bits (403), Expect = 0.0
Identities = 448/469 (96%), Gaps = 5/469 (1%)
Strand=Plus/Plus
Query 4685 GGGTAACCCTCAAGCGGTTTGCTCCACTCGTGGACATAATAAACTATTCTACCCTCTATG 4744
||| |||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 2709 GGG-AACCCTCAAGCGGTTTGCTCCACTTGTGGACATAATAAACCATTCTAGCCTCTATG 2767
Query 4745 ATTCACGTGCTTTTGGTTCTGAAGATAGAACTGACTATGAAAACTTCGTAAGGGATCTCT 4804
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 2768 ATTCACGTGCTTTTGCTTCTGATGATAGGACTGACTATGAAAACTTCGTAAGGGATCTCT 2827
Query 4805 CAAAGCACTTGGTTCAAGAGTCGGAAAGAGTTGATACTTACATGGCCTCAACCATCCAGG 4864
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2828 CAAAGCACTTGGTCCAAGAGTCGGAAAGAGTTGATACTTACATGGCCTCAACCATCCAGG 2887
Query 4865 CTTTTGATGCACCGTGGCCAGTAATTCAGGCGAATGCAATACACTTCTCCACCACCATGT 4924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2888 CTTTTGATGCACCGTGGCCAGTAATTCAGGCGAATGCAATACACTTCTCCACCACCATGC 2947
Query 4925 TGTCACTCTCAGAGGATCAGCACATAATCTCTCTCTACTACCCACAGGTGTTTGAAACGC 4984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2948 TGTCACTCTCAGAGGATCAGCACATAATCTCTCTCTACTACCCACAGGTGTTTGAAACGC 3007
Query 4985 TGGTTAGCAAGATGACCCGGTCGCAAGATTCAGTTGTGAGAGCAGCATGCTCATCAGCCT 5044
|||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 3008 TGGTTAGCAAAATGACCAGGTCACAAGATTCAGTTGTTAGAGCAGCATGCTCATCAGCCT 3067
Query 5045 TTGGGTTACTGCTAAGATCAAGCAAGTCAACACTGTGGAGAGGAGCTCGACTTGA-CGGG 5103
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 3068 TCGGGTTACTGCTAAGATCAAGCAAGTCAACACTCTGGAGAGGAGCTCGACTTGATCGG- 3126
Query 5104 ACCGACTCAGGTAGAAAAGCCAATGATC-TCGAATCTGTTAAGAAATAA 5151
|||||||||||||||||| ||||||||| | || |||||||||||||||
Sbjct 3127 ACCGACTCAGGTAGAAAATCCAATGATCCT-GAGTCTGTTAAGAAATAA 3174
Score = 466 bits (252), Expect = 8e-130
Identities = 276/288 (96%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 4327 ATGCCATCTGCTTGTATGAGCCACTACACAACTCAAGTTATTGGTGTAATATTAGCGTTG 4386
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2422 ATGCCATCTGATTGTATGAACCACTACACAACTCAAGTTATTGGTGTAATATTAGCGTTG 2481
Query 4387 CTTGATGATCTGGATGAGTCTGTGCAACTAACTGCAGTGTCATGCTTGTTGATGGTTACA 4446
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2482 CTTGACGATCTGGAGGAGTCTGTGCAACTAACTGCTGTGTCATGCTTGTTGATGGTCACA 2541
Query 4447 GAGTCAGCTTCTAATGATGCTGTTGAACCTATCTTGCTGAATTTATCTGTTCGGCTTCGT 4506
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2542 GAGTCAGCTTCTAATGATGCTGTTGAACCTATCTTGCTGAATTTATCTATTCGGCTTCGT 2601
Query 4507 AACCTTCAGGTTAGTATGGACCCGAAGATGAGAGCCAATGCATTTTCAGCACTTGGAGCT 4566
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2602 AACCTTCAGGTTAGTATGGACCCGAAGATGAGAGCCAATGCATTTGCAGCACTTGGAGCT 2661
Query 4567 TTAAGTAAATATGCTACTGGAGGGCAACGTGAGGGATTTGTTGAGCAG 4614
|||||||||||||||| |||||||||| | ||||||||||| ||||||
Sbjct 2662 TTAAGTAAATATGCTATTGGAGGGCAAAGGGAGGGATTTGTCGAGCAG 2709
Score = 270 bits (146), Expect = 7e-71
Identities = 154/158 (97%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 3962 GAGTACTTCTAACTTCATTTCAGGCTTTCTGTGAGTGTGTTGGTGATCTGGAGATGGGCA 4021
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2135 GAGTACTTCTAACTTCATTTCAGGCTTTCTGCGAGTGTGTTGGTGATCTGGAGATGGGCA 2194
Query 4022 AGATTTTGGCTCGTAATGGGGAGCAAATAGAAAAAGAAAAATGGGTTGGTCTAATTGGCG 4081
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 2195 AGATTTTGGCTCGTAATGGGGAGCAAAGAGAAAAAGAAAAATGGGTTGATCTTATTGGCG 2254
Query 4082 ATATTGCTGGATGCATTTCAATTAAGAGACCGAAGGAG 4119
||||||||||||||||||||||||||||||||||||||
Sbjct 2255 ATATTGCTGGATGCATTTCAATTAAGAGACCGAAGGAG 2292
Score = 231 bits (125), Expect = 3e-59
Identities = 131/134 (98%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 3319 CTTGTAGCAGCCTTGCATAGTTGCACTGCAGCTATCTGTGACAAAATCAGGCAATCTGCT 3378
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 CTTGTAGCAGCCTTGTACAGTTGCACTGCAGCTATCTGTGACAAAATCAGGCAATCTGCT 2061
Query 3379 GAGGGAGCCATTCAAGCGGTTACTGAGTTTGTTTCAAGAAGAGGGAGTCAGCTTAGTGAC 3438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2062 GAGGGAGCCATTCAAGCGGTTACTGAATTTGTTTCAAGAAGAGGGAGTCAGCTTAGTGAC 2121
Query 3439 AATGATATATCAAG 3452
||||||||||||||
Sbjct 2122 AATGATATATCAAG 2135
Score = 220 bits (119), Expect = 7e-56
Identities = 125/128 (98%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 3116 AGATTCTTGACCAGTTCTTCAGCATTTCCCTTTCCCTTCCAAAAGCTGTACTTACAAGCG 3175
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1874 AGATTCTTGACCAGTTCTTCAGTATTTCCCTTTCCCTTCCAAAAGCTGTACTCACAAGCG 1933
Query 3176 GGTTGGATTCTGAAGACTCCTATAAAGCCCTGTCTTCCCTTGAGGATGTCATTGCCATAT 3235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1934 GGTTGGATTCTGAAGACTCCTATAAAGCCCTGTCTTCCCTTGAGGATGTCATTGCCATTT 1993
Query 3236 TGAAAAGT 3243
||||||||
Sbjct 1994 TGAAAAGT 2001
Score = 169 bits (91), Expect = 2e-40
Identities = 99/103 (96%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 4118 AGGTTCGACATATTTGCATGATTCTAACAAAAGCACTAAACCGTCCACAAAGATTTCAAA 4177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2319 AGGTTCGACATATTTGCATGATTCTAACGAAAGCACTAAACCGTCCACAAAGATTTCAGC 2378
Query 4178 GGGAAGCTGCTGCTGCTGCATTGTCAGAGTTTATACGCTACAG 4220
||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2379 GGGAAGCTGCTGCCGCTGCATTGTCAGAGTTTATACGCTACAG 2421
> Ahg321384 jgi|Araly1|321384|fgenesh1_pm.C_scaffold_4001441
Length=630
Score = 1051 bits (569), Expect = 0.0
Identities = 603/620 (97%), Gaps = 0/620 (0%)
Strand=Plus/Plus
Query 103 ATGGCTTCTCTTAGAGATATTGCCTCCCTGAATCCGCTTCTGGTACTTGATTGTTGCTAT 162
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTTCTCTTAGAGATATTGCCTCGCTGAATCCGCTTCTGGTTCTTGATTGTTGCTAT 60
Query 163 GCTGTGTCTCGTGGAGGACGAAGGCGGTTTGGTAACATGGCTGGGGTTTTTCAAGTAATG 222
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTGTCTCGTGGAGGACGCAGGCGGTTTGGTAACATGGCTGGGGTTTTTCAAGTAATG 120
Query 223 GCATTTAGTGTTGGTGCGTTAGAGAAAGGGGAGAGTGATTCAGTTTTCATGGGAAAGCTT 282
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GCATTTAGTGTCGGTGCGTTAGAGAAAGGGGAGAGTGATGCAGTTTTCATGGGAAAGCTT 180
Query 283 GCTAAGATTGCTACAGCTGAGATTATATCTTCCAAGGAACTAAATGCTGATTGGCAAAGG 342
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTAAGATTGCTACAGCTGAGATAATATCTTCCAAGGAACTAAATGCTGATTGGCAAAGG 240
Query 343 CAAGCATCAGGGCTGCTCGTCTCAATTGGAACACATTTTCCTGATCTTATGATGGAAGAA 402
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGCGTCAATGCTGCTCGTCTCAATTGGAACACATTTTCCTGATCTTATGATGGAAGAA 300
Query 403 ATATTTCTTCATCTGTCTGGTCCGGCTACAGCTGCACCTGCTATGGTTCAAATACTTGCT 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATATTTCTTCATCTGTCTGGTCCGGCTACAGCTGCACCTGCTATGGTTCAAATACTTGCT 360
Query 463 GACTTTGCCTCATCTGATGCTTTGCAGTTCACTCCACGCCTGAAAGGTGTACTTTCAAAG 522
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 GACTTTGCTTCATCTGATGCTTTGCAGTTCACTCCACGCCTGAAAGGTGTACTTTCAAGG 420
Query 523 GTGTCGCCTATTCTTGGGAATGTTCGGGACATACACCGACCAATATTTGCAAATGCATTT 582
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 GTGTCGCCTATTCTTGGGAATGTTCGGGACGTACACCGACCAATATTTGCAAATGCATTT 480
Query 583 AAGTGCTGGTCTCAGGCAGTGTGGCTATACATCACAGATCTTACCTCAGATTCTCCGCTT 642
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGTGCTGGTCTCAGGCAGCGTGGCTATACATCACAGATCTTACCTCAGATTCTCCGCTT 540
Query 643 GACAGTGATGTCATGTCATTTCTGAATTCAGTTTTTGAGCTATTGTTGAGAGTTTGGGCA 702
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACAGTGATGTCATGTCAAATCTGAATTCAGTTTTTGAGCTATTGTTGAGAGTTTGGGCA 600
Query 703 GTTTCCCGAGATCATAAGGT 722
|||| ||||||||||||||
Sbjct 601 ATTTCTCGAGATCATAAGGT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 204901973032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5