BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36835.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482664 jgi|Araly1|482664|fgenesh2_kg.4__1724__AT2G36835.1 1077 0.0
> Ahg482664 jgi|Araly1|482664|fgenesh2_kg.4__1724__AT2G36835.1
Length=732
Score = 1077 bits (583), Expect = 0.0
Identities = 688/736 (93%), Gaps = 18/736 (2%)
Strand=Plus/Plus
Query 1 AGCTGACCACAAAGTTTTCTACTTTGCAATTTAGATAAATCTTTCTATCCACTTT----G 56
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1 AGCTGACCACAAAGTTTTCGACTTTGCAATTTAGATAAATCTTTCTATCCA-TTTACACG 59
Query 57 A-GA-ATAAATTAAGGGCTCTCAATTTCGAATTCTGCTTC-------TCCAACGaaaaaa 107
| | | ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 60 ACAACAAAAATTAAGGGCTCTCAATTTCGAATTCTGCTTCAGTGTTTTCCGGCGAAAAAA 119
Query 108 aCGAAATCTTTAATGGCGAAGAAAGGAGGAGCGACGCTAGCTGAGGATGCACCATGGCGA 167
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 ACG-AATCTTTAATGGCGAAGAAAGGAGGAGCAACGCTAGCTGAGGATGCACCATGGCGA 178
Query 168 GTTTCGTCAGGAAGACCAGTGCCTAAGATCAGTCGCTCTCCGGTTTTATCTATCTCTCAA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTTTCGTCAGGAAGACCAGTGCCTAAGATCAGTCGCTCTCCGGTTTTATCTATCTCTCAA 238
Query 228 AACCCAGAAACCGATTACGCCATTTCCGTCATGAAGCATCCGAATCCTGTGGGAGGTGGG 287
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 AACCCAGAATCCGATTACGCCATTTCCGTCATGAAGCATCCGAATCCAGTGGGAGGTGGG 298
Query 288 TTTGCGATGGAAGCTGTACTTGAATCCGCAGGACCTGAATGCGTTGTTCCTGGCCAAGTA 347
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 299 TTTGCGATGGAAGCTGTACTTGAATCTGCAGGACCTGAATGCGTTGTCCCTGGCCAAGTT 358
Query 348 ACACCTCTTCGGTTACTTGGTGTTAAGGTGTGGCCTGTTGAAGTTGATCTTAAATTCTTG 407
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 ACACCTCTTCGGTTACTTGGTGTTAAGGTGTGGCCAGTTGAAGTTGATCTTAAATTCTTG 418
Query 408 GAACCAGTGGGAAAGGAGCTGAAAATGCTTGGGAAGTTCATGGACAACGCTGTCGAGCTG 467
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 419 GAACCAGTGGGAAAAGAGCTGAAAATGCTTGGGAAGTTCATGGACAACGCCGTCGAGCTG 478
Query 468 ATGAATAAGTCCTTCATTGACCGCTAAGCAC-AGTGGATAACCGGTCATATACTTGTCAA 526
|||||||||||||||||||||||||| |||| | ||||||| |||| |||||||||||||
Sbjct 479 ATGAATAAGTCCTTCATTGACCGCTAGGCACTA-TGGATAAACGGTTATATACTTGTCAA 537
Query 527 GGTTCTACACCTGGAGTTTTGGGATTGCGGGATATCTGTCTAGTCGCCAGAACTTGTTAG 586
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 538 GGTTCTACACCTGGATTTTTGGAATTGCGGGAGATCTGTCTAGTCGCCAGAACTTGTTAG 597
Query 587 TGGCAGAGAGATCTGATATGAGCAAAGTTGAATACGGTGTGCGTGTGTTTGTATAGAGGA 646
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 598 TGGCAGAGAGATCTGGTATGAGCAA-GTTGAATATGGTGTGCGTGTGTTTGTATAGAGGA 656
Query 647 TTTTTACAGACAGAATCTATATACTATCAAATAATTGGTTTTAATGACAGTTTTAAAAAT 706
||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 657 TTTTTACAGACAGAATCTATACACTATCAAATCATTAATTTGAATGACAGTTTTAAAAAT 716
Query 707 GTCTTTAAAGGCTTAT 722
| |||||||| ||||
Sbjct 717 TTATTTAAAGGTTTAT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5