BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36840.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482665 jgi|Araly1|482665|fgenesh2_kg.4__1725__AT2G36840.1 2049 0.0
> Ahg482665 jgi|Araly1|482665|fgenesh2_kg.4__1725__AT2G36840.1
Length=1526
Score = 2049 bits (1109), Expect = 0.0
Identities = 1300/1388 (94%), Gaps = 29/1388 (2%)
Strand=Plus/Plus
Query 22 AAACATGGGTTCAAGTACAACAACACGACGAATCACTT-AAGCTCAACACGACAACACCT 80
|||||||| ||||||||||||||||||||||| ||||| ||||| || || | |||
Sbjct 1 AAACATGGCTTCAAGTACAACAACACGACGAACCACTTAAAGCT---CA--AC--C-CCT 52
Query 81 TTGACTCTATCTTTCTCATCTCCAAATAAAAACCAAACT-AAACCA-TCACAGAAGCTG- 137
|||||||| ||| ||| ||| | || || || | |||||| |||||||||| |
Sbjct 53 TTGACTCTCTCTCTCT-TTCT-C--AT---CTCC-AA-TAAAACCAGTCACAGAAGC-GC 102
Query 138 AAAAAGTTCAAAACTTTAAGGTACAAGATGGGAATTTTGTCGGACGACGTAGTGATAATC 197
||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 103 AAAAACTCCAAAAGTTTAAGGTACAAGATGGGAAATTTGTCGGACGACGTAGTGATAATC 162
Query 198 AGTCAATCGGAGAAAGAAGGTGACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AGTCAATCGGAGAAAGAAGGTGACCCGAGTGTTATAACCATCAATTGTCCTGACAAAACT 222
Query 258 GGTCTGGGTTGTGATCTCTGTCGTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGA 317
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGTCTAGGTTGTGATCTCTGTCGTATCCTCCTCTTCTTCGGCCTCAACATTGTCAGAGGA 282
Query 318 GATGTCTCAACTGATGGAAAATGGTGCTACTTGGTCTTCTGGGTGATTGGGAAACCAAAC 377
||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 283 GATGTATCGACTGATGGGAAATGGTGTTACTTGGTCTTCTGGGTGATTGGGAAACCTAAC 342
Query 378 ACGAGATGGAATCTGTTGAAGATGAGACTTGTAGAGGCAAGTCCTTCTTTTTCTTGGGCC 437
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 343 ACAAGATGGAATCTGTTGAAGATGAGACTTGTAGAGGCGAGCCCTTCTTTTTCTTGGGCC 402
Query 438 TTTGGTATCTCAAGATGTTACCTTTCTGATTCTGAGTCTCAGCCTCCCAAGCTTCCTGAT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTTGGTATCTCAAGATGTTACCTTTCTGATTCTGAGTCTCAGCCTCCCAAGCTTCCTGAT 462
Query 498 CTTTTC-TTATTGAAGCTAGCTTGTTCTGACCGCACAGGGCTTCTTTATGATGTCACAGA 556
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 463 CTTTTCCTT-TTGAAGCTAGCTTGTTCTGACCGCACAGGGCTTCTCTATGATGTCACAGA 521
Query 557 GGTTCTTTACAAGCTTGAGATTAACATTGAGAAAGTTAAGATATCGACTACCCCTGATGG 616
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 522 GGTTCTTTACAAGCTTGAGATTAACATTGAGAAAGTTAAGATATCAACCACCCCTGATGG 581
Query 617 AAAAGTGATGGACTTGTTCTTTGTCACAGACACTAGAGAGCTTTTAGGGACGGTTAAGAG 676
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 582 AAAAGTGATGGACTTGTTCTTTGTCACAGAGACTAGAGAGCTTTTAGGGACGGTGAAGAG 641
Query 677 GCGGAATGAAGTGTATGAGTACCTGAGAGATGCTATAGGAGATTCAATGATCAGCTATGA 736
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 642 GCGGGATGAAGTGTATGAGTACCTGAGAGATGCCATAGGAGATTCAATGATCAGCTATGA 701
Query 737 CATTGAACTTGTTGGCCCTGAAATCACAGCTTGCTCA-A--CTTCCTCGTCGGTTGCAGA 793
|||||||||||||||||| |||||||||||| |||| | ||||||| || ||||||||
Sbjct 702 CATTGAACTTGTTGGCCCAGAAATCACAGCTCGCTCGCAGGCTTCCTCATCTGTTGCAGA 761
Query 794 AACATTGTTCTCCTCGGATGTGTCGGGAGAGCATTCGAGTGGGTTACACACTTCAAGCAA 853
||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 762 AACATTGTTCTCCTCAGATGTGTCAGGAGAGCACCCGAGTGGGTTACAAACTTCAAGCAA 821
Query 854 TGTTTCTATTGCAGTTGACAACTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTG 913
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TGTGTCTATTACAGTTGACAACTCGCTAAGCTCAGCTCACACCCTCATTCATATCACTTG 881
Query 914 TCAAGATCACAAAGGTCTTCTCTATGATATTATGAGGACCTTCAAGGATTTCAACATTCA 973
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 882 TCAAGATCACAAAGGCCTTCTCTATGATATTATGAGAACCTTCAAGGATTTCAACATTCA 941
Query 974 GATCTCATATGGGCGTTTTACAATCAAA-CTAGGAAAGAACTGTGAGATCGACTTGTTCA 1032
||||||||||||||| ||||| || ||| | ||||| |||||||||||||||||||||||
Sbjct 942 GATCTCATATGGGCGATTTACCAT-AAAGCGAGGAAGGAACTGTGAGATCGACTTGTTCA 1000
Query 1033 TAGTGCAATCTGATGGCCGAAAGATCCTTGACTCGAGCAAGCTAAATGCATTGATTACTC 1092
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TCGTGCAATCTGATGGCCGAAAGATCCTTGACTCGAGCAAGCTAAATGCATTGATTACTC 1060
Query 1093 GTTTAAGAGCAGAGCTACAGCAACCTCTGAGAGTGGTAATGATGAATCGAGGTCCAGATA 1152
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1061 GTTTAAGAGCAGAGCTACAGCAACCGCTGAGAGTGGTAATGATGAATCGAGGTCCAGATA 1120
Query 1153 CTGAACTTCTAGTCACAAACCCAGTTGAGTTATCAGGAAAGGGACGGCCACAAGTCTTCC 1212
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1121 CTGAACTTCTAGTTACAAACCCTGTTGAATTATCAGGAAAGGGACGGCCACAAGTCTTCC 1180
Query 1213 ACGACATAGCACTTGCCCTCAAGAAGATCGATACCTGCATCTTCTCGGCTGAAATTGGAA 1272
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1181 ATGACATAGCACTTGCCCTCAAGAAGATCAATACCTGCATCTTCTCGGCTGAAATTGGAA 1240
Query 1273 GACACGTGACTGGAGACAGAGAATGGGAGGTGTACAAAGTGTTGATCAACGAAGAAGACA 1332
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GACACTTGACGGGAGACAGAGAATGGGAGGTGTACAAAGTGTTGATCAACGAAGAAGACA 1300
Query 1333 GCTTACCAATCCCGAGAAGCAAGATAGAGGAAGAAGTATGGAAAACTTTGATGGGCTGGG 1392
||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1301 GCTTACCGATCCCGAGAAGCAAGATAGAGGAAGAAGTCTGGAATACTTTGATGGGTTGGG 1360
Query 1393 AATGAAAA 1400
| ||||||
Sbjct 1361 AGTGAAAA 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5