BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36870.1
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482667 jgi|Araly1|482667|fgenesh2_kg.4__1727__AT2G36870.1 1773 0.0
> Ahg482667 jgi|Araly1|482667|fgenesh2_kg.4__1727__AT2G36870.1
Length=1093
Score = 1773 bits (960), Expect = 0.0
Identities = 1051/1095 (96%), Gaps = 5/1095 (0%)
Strand=Plus/Plus
Query 5 TCCACTCTTCTTCTTTCCACTCCACACAAAAGAAGAA-AAAGAGAGAAATGGGTAACTCT 63
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 1 TCCACTCTTCTTCTTTCCACTCCACACAAAAGAAGAAGAAAGA-A-AAATGGGCAACTCT 58
Query 64 TTGATCTCTCTTCTCTCAATCTTCCACTTGCTGGTGTTATGGGGATCCTCAGTGAATGCC 123
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 59 TTGATCTCTCTTTTCTCAATCTTCCACTTGTTGGTGTTATGGGGATCCTCAGTGAATGCT 118
Query 124 TATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTGGTTCCCTCAACTTCTAC 183
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 119 TATTGGCCACCATCACCTGGTTATTGGCCAAGCTCCAAGGTTAGCTCCCTCAACTTTTAC 178
Query 184 AAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAGGTTTTAGGAATCTTTGGGGTCCTCAGCATCAGAGAATGGACCAAAATGCCCTCACC 238
Query 244 ATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ATCTGGCTTGATAGAACCTCAGGAAGTGGATTCAAGTCAGTGAAGCCATTCAGATCAGGC 298
Query 304 TACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TACTTTGGAGCAAACATCAAACTCCAACCTGGCTACACTGCTGGAGTCATCACATCTCTC 358
Query 364 TATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAGGTAGACATAGAATTTTTG 423
||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 359 TATCTATCAAATAATGAGGCACATCCAGGGTTCCATGATGAAGTGGACATAGAATTTCTG 418
Query 424 GGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTATATTAGAGGAAGTGGT 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 GGGACAACATTTGGGAAGCCTTACACACTTCAGACAAATGTGTACATTAGAGGAAGTGGT 478
Query 484 GATGGGAAAATCATTGGCCGTGAGATGAAGTTTCGCTTGTGGTTTGATCCAACTAAAGAT 543
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 479 GATGGCAAAATCATTGGTCGTGAGATGAAGTTTCGTTTGTGGTTTGATCCAACTAAAGAT 538
Query 544 TTTCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATT 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCCACCATTATGCTATTCTTTGGAGCCCTAGAGAAATCATATTTTTGGTGGATGATATT 598
Query 604 CCCATAAGAAGATACCCAAAGAAGAGTGCGTCTACATTTCCTTTAAGACCAATGTGGCTT 663
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 CCCATAAGAAGATACCCAAAGAAGAGTGCGGCTACATTTCCTTTAAGACCAATGTGGCTT 658
Query 664 TATGGTTCCATATGGGATGCTTCTTCTTGGGCAACGGAAGACGGTAAATACAAAGCCGAC 723
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 659 TATGGTTCCATATGGGATGCTTCTTCTTGGGCAACCGAAGATGGTAAATACAAAGCCGAC 718
Query 724 TATAAATATCAACCTTTCACTGCTAAATACACCAATTTTAAAGCGCTCGGCTGCACCGCC 783
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 719 TATAAATATCAACCTTTTACTGCAAAATACACCAATTTTAAAGCCCTCGGCTGCACCGCC 778
Query 784 TACTCGTCAGCTCGGTGCTATCCGTTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACC 843
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 TACTCGTCGGCTCGGTGCTATCCATTGTCGGCTTCGCCATACCGTTCTGGCGGATTAACC 838
Query 844 CGACAACAACACCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGC 903
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGGCAACAACAGCAAGCCATGAGATGGGTTCAAACACATAGTATGGTATACAATTATTGC 898
Query 904 AAAGATTATAAGCGAGACCATTCTTTAACGCCGGAATGTTGGCGTTAGGAAATATTCGAT 963
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 899 AAAGATTATAAGCGAGACCATTCTCTAACGCCGGAATGTTGGCGTTAGGAAACATTTGAG 958
Query 964 GAAAGTCCCAAAGTTTGAGAGTTTTAATCACATCAAAGTTAATACCAGAAAGAGCTTGGT 1023
|||||||||||||||||||| ||||||| ||||||||| ||||||| ||||||||||||
Sbjct 959 GAAAGTCCCAAAGTTTGAGAATTTTAATTACATCAAAGACAATACCACAAAGAGCTTGGT 1018
Query 1024 ACAATTTTGGGAtttttt-t-CATTACTATTATTATGTGGTTGGTTGTTTCACGAAAATA 1081
| |||||||||||||||| | |||||||||||||| ||||||| |||||||||| |||||
Sbjct 1019 AAAATTTTGGGATTTTTTGTTCATTACTATTATTACGTGGTTGTTTGTTTCACGGAAATA 1078
Query 1082 AATTTTCtttttttt 1096
||||||| |||||||
Sbjct 1079 AATTTTCCTTTTTTT 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43841354550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5