BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36885.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482670 jgi|Araly1|482670|fgenesh2_kg.4__1730__AT2G36885.1 1286 0.0
> Ahg482670 jgi|Araly1|482670|fgenesh2_kg.4__1730__AT2G36885.1
Length=894
Score = 1286 bits (696), Expect = 0.0
Identities = 833/898 (93%), Gaps = 14/898 (2%)
Strand=Plus/Plus
Query 24 CTCTATCCTCCAATGGCGGCAATCACCGGATTCTCCGCTCTCTCAAACCATATCTCTCCT 83
|||| | |||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 1 CTCTCTTCTCCAATGGCGGCAATCACCGGATTCTCCGCTCTTTCAAGCCCTATCTCTCCT 60
Query 84 GCTTCATCACTTCC-GTCGTCGCGTTTACTCAATTCCACTCAGTGTCTGTCCAGATTCTC 142
||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||
Sbjct 61 CCTTCATCACTTCCGGT-ATCGCGTTTACCCAATTCCACTCAGTGTCTCTCCAGATTCTC 119
Query 143 AAATGTGTCTTCGTTTCCCGCGCTCTCTACCTT-TCGCCGGAGAAAGATCCCGTTGACTC 201
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 120 AAATGTATCTTCGTTTCCCGCGCTCTCTA-CTTCTCGCCGGAGAAAGATCCCGTTGACTC 178
Query 202 CGGCGTGTTCTTCGATA-GTCGACGGAGATGAAGAAATTGAAGCAAGAGGTGATGATGAG 260
||||||||||||||||| | | ||||||| ||| ||||||||| | |||||||||||
Sbjct 179 CGGCGTGTTCTTCGATACG-CAACGGAGACGAATCTGTTGAAGCAATAAGTGATGATGAG 237
Query 261 AATGAGATTAGAGAGACATTGATGTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCT 320
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AATGAGATTAAAGAGACATTGATGTTATCAGTCTCTCCTTTGCCTCTCCTCCTCGTTGCT 297
Query 321 TCTCTCCCTGGAGC------CGAAACTGTAAGATCTGTGTTTGGACCCGTTGTGGAGATT 374
|||||||||||||| ||||||||||| |||||| |||||||| ||||| ||||||
Sbjct 298 TCTCTCCCTGGAGCTAATAACGAAACTGTAACATCTGTTTTTGGACCTGTTGTTGAGATT 357
Query 375 GTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATGGCA 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTAAAATCCTTGAATCTACCTGATTGGCTTGTTCATTGGGGACATCCAGGGAACATGGCA 417
Query 435 GTGGTACTTTTTGCTATGGGTGGCTATGGAACATACCTAGGCTTCCGGATTCGTTATTCT 494
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 418 GTTGTACTTTTTGCTATGGGTGGCTATGGAACATACTTAGGCTTCCGGATTCGTTATTCT 477
Query 495 GATGACATTGAGGAGAAGGCAAAGGCAAAAGACCTGCACCCAAAGCTTCTAGCCGGAATG 554
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 478 GATGATATTGAGGAGAAGGCAAAGGCAAAAGACCTACACCCGAAGCTTCTAGCCGGAATG 537
Query 555 TTTTTCTTTTTCGCCCTTGGAGCAACTGGTGGTGTTATATCCCTTCTTACTTCCGACAAA 614
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 538 TTTTTCTTTTTCGCTCTTGGAGCAACTGGTGGTGTCATATCCCTTCTTACTTCTGACAAA 597
Query 615 CCCATCTTCGAAAGTCCGCACGCTGTTACAGGACTTATAGGTCTTGGCCTATTGACGGTT 674
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 598 CCCATCTTCGAAAGTCCGCACGCTGTTACAGGACTCATAGGTCTTGGCCTATTGACGATT 657
Query 675 CAAACAATCTTACCATCTTTGTTCAAGGAGAAACCCGAACTGAGGAACGTGCACGGGATC 734
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 658 CAAACAATCTTACCATCTTTGTTCAAGGAGAAACCTGAACTGAGGAATGTGCACGGGATC 717
Query 735 CTTGGGAGCGGGATAATGGCGCTTTTCCTCGTCCATGCTGCTTTCGGCCTTCAGCTCGGT 794
|| ||||| || || |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 718 CTCGGGAGTGGAATTATGGCGCTATTCCTCGTCCATGCTGCTTTCGGTCTTCAGCTCGGT 777
Query 795 CTCAGTTTCTAATTATTCTTTACTGATCTCTTCTCTTATGTTTGTATTCTT-CAGCTGCA 853
||||||| || | ||||||| ||||||| ||||||||||||||||||| || ||||||||
Sbjct 778 CTCAGTTACTGACTATTCTTCACTGATCGCTTCTCTTATGTTTGTATTATTTCAGCTGCA 837
Query 854 ACCACAACCAtttttttCTTTAAAGCCTTAAAATTTCAATAAAAGAAGATATATAGAG 911
|| |||| | ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 838 ACAACAAACTTTTTTTTCTTTAAAGTCTTAAAATTT-AATAAAAGAAGATATATAGAG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5