BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36890.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482672 jgi|Araly1|482672|fgenesh2_kg.4__1732__AT2G36890.1 1389 0.0
> Ahg482672 jgi|Araly1|482672|fgenesh2_kg.4__1732__AT2G36890.1
Length=952
Score = 1389 bits (752), Expect = 0.0
Identities = 909/978 (93%), Gaps = 37/978 (4%)
Strand=Plus/Plus
Query 1 ATCTCAACCAAAACACTTAGACCAAGAGAGACAGATAGAGAGATGGGTAGGGCTCCATGT 60
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATCTCAACCAAAACACATAGACCAAGAGAGACAGTTAGAGAGATGGGTAGGGCTCCATGT 60
Query 61 TGTGACAAGGCAAATGTGAAGAGAGGTCCATGGTCTCCTGAAGAAGACGCAAAGCTTAAA 120
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TGTGACAAGGAAAATGTGAAGAGAGGTCCATGGTCTCCTGAAGAAGATGCAAAGCTTAAA 120
Query 121 GATTACATCGAGAAACAAGGAACTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTACATCGAGAAACAAGGCACTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGT 180
Query 181 TTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAATTATTTGAGACCAAACATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAATTATTTGAGACCTAACATA 240
Query 241 AGACATGGAGATTTCACTGAAGAAGAAGACAATATTATCTACAGCCTCTTTGCCTCCATT 300
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 241 AGACATGGAGATTTCACTGAGGAAGAAGACAAGATTATCTACAGCCTCTATGCCTCCATT 300
Query 301 GGAAGCAGGTGGTCAGTAATAGCAGCTCACTTGCAAGGTAGAACTGATAATGACATCAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAGCAGGTGGTCAGTAATAGCAGCTCACTTGCAAGGTAGAACTGATAATGACATCAAG 360
Query 361 AACTATTGGAACACTAAGCTCAAGAAGAAGCTCATAGCCACCATGGCTCCTCCTCCACAT 420
||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||
Sbjct 361 AACTATTGGAACACTAAGCTCAAGAAGAAGCTCATTGCCTCCATGGCTCCTCCTTCACAT 420
Query 421 CACCACTTAGCCATTGCTAcatcatcatcatcagcatccccatcatcatcatcacatTAC 480
||||||||||||| |||||||||||||||| | |||| | | ||||| || ||||
Sbjct 421 CACCACTTAGCCACTGCTACATCATCATCA-C--CATC---A-C--CATCA-CA--TTAC 468
Query 481 AACATGATCAATAGTCTTCTTCCGTATAACCCATCA--A-CAA-A--CCAACTTCTCACA 534
|||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||
Sbjct 469 AACATGATCAATAGTCTTCTTCCGTATAACCCATCAGTATCAACAAACCAACTTCTCACA 528
Query 535 CCTCATCAGGGTATCATGATGACAATGATGGGCCAACAACAACAACTA-T-TT-TATCAA 591
||||| |||||| ||||||||||||||||||||||||||||||| | | || ||||||
Sbjct 529 CCTCA---GGGTATGATGATGACAATGATGGGCCAACAACAACAACAACTATTATATCAA 585
Query 592 GAAGACATGGGCAATTTGGTAAATTCTC-CAAACAGAAACAA-TCTCATAATGAGCCATC 649
||||||||||||| |||||||||||| | ||||||| ||||| | |||||||||||||||
Sbjct 586 GAAGACATGGGCAGTTTGGTAAATTC-CGCAAACAGCAACAAGT-TCATAATGAGCCATC 643
Query 650 AAGAAGACAACCAAGAGCAAAGTACAAACAAGGGAATAATGTTGTTGAGTGATGTAAGAA 709
||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 644 AAGAACACAGCCAGGAGCAAAGTACAAACAATGGAATAATGTTGTTGAGTGATGTAAGAA 703
Query 710 GTGGGTCGAGTACAACAAGTACAGTAACAAGAGtgaagatggaacatcgtgatcatgatg 769
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 704 GTGGGTCGAGTACAACAAGTACAGTAACAAGAGTGAAGATGGAACATC-T---C--GAT- 756
Query 770 atcatcatcatcatcatgaagaagatgagagatcaatgaCCTCGGTAGTGATGGAAGATT 829
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 757 --CATCATCATCATCATGAAGAGGATGAGAGATCAATGAGCTCGGTAGTTATGGAAGATT 814
Query 830 ATGGAATGGAGGAGATCAAGCAATTAATAAGTAGTAGTTGTACGAGTAGTAACAATAGCT 889
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 815 ATGGAATGGAGGAGATCAAGCAATTAATAAGTAGTAGTTGTACGAGTGGTAACAATAGCT 874
Query 890 TGTGGTTTGACGAAAACAAGACGGAGGATAAGTTCATGTTGTACTACTGATCTCGAGTAC 949
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 875 TGTGGTTTGACGAAAACAAGACAGAGGATAAGTTCATGTTGTACTATTGATCCCTCTTAC 934
Query 950 CAACTTTGATTTAATCTC 967
||||||||||| ||||||
Sbjct 935 CAACTTTGATTAAATCTC 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5