BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36895.1

Length=878
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321394 jgi|Araly1|321394|fgenesh1_pm.C_scaffold_4001451           590    7e-168


> Ahg321394 jgi|Araly1|321394|fgenesh1_pm.C_scaffold_4001451
Length=609

 Score =  590 bits (319),  Expect = 7e-168
 Identities = 354/371 (95%), Gaps = 2/371 (1%)
 Strand=Plus/Plus

Query  362  ATCACTAGAAAAACATCAAAAGTTTCATGAAAGTGCTTACATGGATCCTGCTCAAGGTCT  421
            ||||| ||||||||||||||||||||| |||||| | ||||||||||| |||||||||||
Sbjct  240  ATCACCAGAAAAACATCAAAAGTTTCAAGAAAGTTCCTACATGGATCCCGCTCAAGGTCT  299

Query  422  ATGTCTTGGAGCTCTCTTT-GACATCGCAGCGACAAATGGACTGGATATGGGAAGAAGAC  480
            ||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct  300  ATGTCTTGGAGCTCT-TTTCGACATCGCAGCTACAAACGGACTGGATATGGGAAGAAGAC  358

Query  481  TATGTATCTTTGGATTCTGTCGTTCTGTTGAGATGCTTAGTGATGTTGTTGAAGATACTG  540
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  359  TATGTATCTTTGGATTCTGCCGTTCTGTTGAGATGCTTAGTGATGTTGTTGAAGACACTG  418

Query  541  TCTTAGAACACGGTGGAGAGATTGTTGCTACAGAGACAGAGAGCACAAGTGGTTTACAAG  600
            |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  419  TCTTAGAACATGGTGGAGAGATTGTAGCTACAGAGACAGAGAGCACAAGCGGTTTACAAG  478

Query  601  AGAAGCTAACGATGACAGTTGCGGTTCCATATCTCTGGGGGGTTCCTCCGGCTGCAGAAA  660
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  479  AGAAGCTAACGATGACAGTGGCGGTTCCATATCTCTGGGGGGTTCCTCCGGCTGCAGAAA  538

Query  661  GGCTTCACCTTGCAGTTCGAACCGGTGGAGGCATCGTAGACAAAGTTTATTGGCAATGGC  720
            ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  539  GGCTTCATCTTGCGGTTCGAACCGGTGGAGGCATCGTAGACAAAGTTTATTGGCAATGGC  598

Query  721  ATTTCTTGTGA  731
            |||||||||||
Sbjct  599  ATTTCTTGTGA  609


 Score =  220 bits (119),  Expect = 1e-56
 Identities = 140/150 (93%), Gaps = 2/150 (1%)
 Strand=Plus/Plus

Query  33   ATGGCAGAGACTTCTACGCTTCTCTTCTCTACCTTCTCCTCTCACCTCACGATCTCTCCT  92
            ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGCGGAGACTTGTACGCTACTCTTCTCTACCTTCTCCTCTCACCTCACGATCTCCCCT  60

Query  93   TTTCGCCAATCTCATCCCTCCGCCGCTCGATTCTCATCTCTTCTTTCCCGCGTTCGGCCA  152
            |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  61   TTTCGCCACTCTCATCCCTCCGCCGCTCGATTCCCATCTCTTCTTTCCCGCGTTCGGCCA  120

Query  153  TCACGATTCGCGGTTAAAG-CATCACATTA  181
            || |||||||| || |||| ||||||||||
Sbjct  121  TCTCGATTCGCCGT-AAAGGCATCACATTA  149



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32518848201


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5