BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36900.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482673 jgi|Araly1|482673|fgenesh2_kg.4__1733__AT2G36900.1 1266 0.0
Ahg495111 jgi|Araly1|495111|fgenesh2_kg.8__927__AT5G50440.1 745 0.0
> Ahg482673 jgi|Araly1|482673|fgenesh2_kg.4__1733__AT2G36900.1
Length=828
Score = 1266 bits (685), Expect = 0.0
Identities = 789/838 (94%), Gaps = 11/838 (1%)
Strand=Plus/Plus
Query 1 CCGATTAAATCTCGATCTTTTCTCGTCGTAACATCTCCGATTGCGATTTATCCTGCGGCT 60
||||| ||||||||||| ||||||||| | ||||||||||||||||| ||| |||| |
Sbjct 1 CCGATCAAATCTCGATC--TTCTCGTCGCAGCATCTCCGATTGCGATTGCTCCGGCGG-T 57
Query 61 AA-TTCCAGGACGGCGCCACAAGTCTCTCGTCTGCTCTCTCTTGCTCAGAGACGCTTCGG 119
|| ||| ||||||||| |||||| ||||||||| || |||||||||||||||||||||||
Sbjct 58 AATTTCTAGGACGGCGTCACAAGCCTCTCGTCTTCTTTCTCTTGCTCAGAGACGCTTCGG 117
Query 120 TAACGAGAAGTCCTGATCTGAGAGATACAATGGCGTCTGGTATCGTCGAAGGAGGCGGAT 179
||||||||||||||||||| ||| ||||||||||| ||||||| |||||| ||||
Sbjct 118 TAACGAGAAGTCCTGATCT----GAT---ATGGCGTCTGGGATCGTCGGAGGAGGTGGAT 170
Query 180 CCTTATCGGATGTATATAGTAGTGCGAAAAGGATTCTACTCAAGGCTCGCGACGGAATCG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CCTTATCGGATGTATATAGTAGTGCGAAAAGGATTCTACTCAAGGCTCGCGACGGAATCG 230
Query 240 AGAGGTTAGAGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 AGAGGTTAGAGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGA 290
Query 300 AACGAGATATTACTGAGGTCCGATCTCTCTGCTCTAACATGGATACTCTCTGGCGCTCAA 359
||||||| ||||||||||||||| |||||||||| ||||||||| |||| ||||||||||
Sbjct 291 AACGAGACATTACTGAGGTCCGAGCTCTCTGCTCAAACATGGATTCTCTTTGGCGCTCAA 350
Query 360 TTCCTGTTAAATCTCAGCGCGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAG 419
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTCCTGTTAAATCCCAGCGTGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAG 410
Query 420 CTGAGTATTTGAATCTAAGTCTGGAGAAATACATGTCGAGGAATCAGAGGAAGATGTTGG 479
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 411 CTGAGTATTTGAATCAAAGTCTGGAAAAATACATGTCGAGGAATCAGAAAAAGATGTTGG 470
Query 480 AAGCTAAAGAGAGAGCGGATTTGCTAGGTAGAGCGAGTGGAGAAGGAGCTCACATTTTGC 539
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 471 AAGCTAAAGAGAGAGCGGATTTGCTAGGAAGAGCGAGCGGAGAAGGGGCTCACATTTTGC 530
Query 540 AGATATTTGATGAGGAAGCTCAAGCTATGAGCTCTGTGAAGAACTCAAAGAGAATGCTTG 599
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 531 AGATATTTGATGAGGAAGCTCAAGCTATGAACTCTGTGAAGAACTCAAAAAGAATGCTTG 590
Query 600 AAGAGTCGTTTTCTAGTGGTGTTGCTATCCTCTCCAAATATGCTGAACAAAGGGATCGTT 659
||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 591 AAGAGTCGTTTTCAAGTGGAGTTGCTATCCTCTCCAAATATGCTGAACAAAAGGATCGTT 650
Query 660 TGAAGAGTGCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAATTCGG 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 651 TGAAGAATGCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAACTCGG 710
Query 720 TACTGAGGCTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TACTGAGGCTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGA 770
Query 780 TCGCAACACTTGTCATATTATATCTGTTCATAAGATGGACACGCTAAGCCGAAGAAAA 837
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 771 TCGCAACACTTGTCATATTGTATCTGTTCATAAGATGGACACGCTAAACAGAAGAAAA 828
> Ahg495111 jgi|Araly1|495111|fgenesh2_kg.8__927__AT5G50440.1
Length=856
Score = 745 bits (403), Expect = 0.0
Identities = 562/638 (88%), Gaps = 13/638 (2%)
Strand=Plus/Plus
Query 191 GTATATAGTAGTGCGAAAAGGATTCTACTCAA-GGCTCGCGACGGAATCGAGAGGTTAGA 249
|||||||||||||| |||||||||||||| || |||||| ||||||||||||||||| ||
Sbjct 112 GTATATAGTAGTGCAAAAAGGATTCTACT-AAGGGCTCGGGACGGAATCGAGAGGTTGGA 170
Query 250 GAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGAAACGAGATAT 309
|||||||| | | || | ||| || ||||||| |||| |||||||||||||||||
Sbjct 171 GAGGTTCG----A-C-TC--T-GATCCTACCGATCTCTCCTCATCCGTGAAACGAGATAT 221
Query 310 TACTGAGGTCCGATCTCTCTGCTCTAACATGGATACTCTCTGGCGCTCAATTCCTGTTAA 369
||||||||| | |||||| || || || ||||| ||||||||| || || ||||| ||
Sbjct 222 TACTGAGGTTCAATCTCTTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTGAA 281
Query 370 ATCTCAGCGCGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAGCTGAGTATTT 429
||| ||||| ||||| ||||||||||||| ||||||||| |||||||| || ||||||||
Sbjct 282 ATCCCAGCGTGATCTTTGGAGAAGAAAGAGTGAACAAGTAGGAGAAGAGGCCGAGTATTT 341
Query 430 GAATCTAAGTCTGGAGAAATACATGTCGAGGAATCAGAGGAAGATGTTGGAAGCTAAAGA 489
||| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 342 GAACCAAAGTCTGGAGAAATACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCGAAAGA 401
Query 490 GAGAGCGGATTTGCTAGGTAGAGCGAGTGGAGAAGGAGCTCACATTTTGCAGATATTTGA 549
||||||||||||| ||||||||| ||| |||||||||||||| |||||||| ||||||||
Sbjct 402 GAGAGCGGATTTGTTAGGTAGAGGGAGCGGAGAAGGAGCTCATATTTTGCAAATATTTGA 461
Query 550 TGAGGAAGCTCAAGCTATGAGCTCTGTGAAGAACTCAAAGAGAATGCTTGAAGAGTCGTT 609
|||||||||||||| |||| |||||| ||||| || ||||||||||| ||||| ||| |
Sbjct 462 TGAGGAAGCTCAAGGAATGAACTCTGTCAAGAATTCGAAGAGAATGCTCGAAGATTCG-T 520
Query 610 TTC-TAGTGGTGTTGCTATCCTCTCCAAATATGCTGAACAAAGGGATCGTTTGAAGAGTG 668
||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 521 TTCAAAGTGGAGTTGCTATCCTCTCCAAATATGCCGAACAAAAGGATCGTTTGAAGAGGG 580
Query 669 CACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAATTCGGTACTGAGGC 728
||||||| || |||||||||||||||||||| || ||||||||||| || ||| ||||||
Sbjct 581 CACAGCGGAAGGCTTTGGATGTTCTGAACACTGTTGGGCTCTCCAACTCTGTATTGAGGC 640
Query 729 TCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGATCGCAACAC 788
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 641 TCATTGAGAGGCGCAATCGTGTTGATACATGGATTAAATACGCCGGTATGATCGCAACGC 700
Query 789 TTGTCATATTATATCTGTTCATAAGATGGACACGCTAA 826
|||||||||| ||||| |||||||||||||||||||||
Sbjct 701 TTGTCATATTGTATCTCTTCATAAGATGGACACGCTAA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5