BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36920.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482675 jgi|Araly1|482675|fgenesh2_kg.4__1735__AT2G36920.1 370 1e-101
Ahg352538 jgi|Araly1|352538|fgenesh1_pg.C_scaffold_6003131 147 2e-34
> Ahg482675 jgi|Araly1|482675|fgenesh2_kg.4__1735__AT2G36920.1
Length=982
Score = 370 bits (200), Expect = 1e-101
Identities = 259/287 (90%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 391 TTCAGGTGAAGAACATGGCACAAACAATTCTGACACTTTGGGAGACCCAAGTAACATTTC 450
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 614 TTCAGGTGAAGAACATGACACAAACAATTCTGACACTTTGGGAGACTCAAGTAACATTTC 673
Query 451 TCTTCGTTGTTTTGGGAGCATTGAATCCATATTGAAGGTAGCAAGAGATGGAATAGAGAT 510
|||| ||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
Sbjct 674 TCTTGGTTGTTTTGGGAGCATTGAATCCATATTGAAGGCAACAAGAGATGGAAAAGAGGT 733
Query 511 TACGATGATGCCTATCCCTAGACTTGTCAACAACGCACCTCAATGGACCATCAAGAAGAG 570
| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 734 TCCGACGATGCCTACCCCTAGACCTGTCAACAACGCACCTCAATGGACCATCAAGAAGAG 793
Query 571 ACTGACCGAGCATA-ATGTTAACCCTACTTATGGCCAACTTCGTCTGCCCAGAAGCTTCT 629
| ||||| || | | ||||||||||| | ||||||||||| |||||||||| |||| ||
Sbjct 794 ATTGACCAAGAA-AGATGTTAACCCT--T-ATGGCCAACTTAGTCTGCCCAGTAGCTCCT 849
Query 630 TCGAACAGCAGATTCGAGGACATCTGCCTGAAGCTGATTTGCAAAAG 676
|||| ||||| |||||| ||||||||||||||| ||||||| ||||
Sbjct 850 TCGATCAGCATATTCGAAGACATCTGCCTGAAGAAGATTTGCCAAAG 896
Score = 359 bits (194), Expect = 3e-98
Identities = 275/312 (88%), Gaps = 14/312 (4%)
Strand=Plus/Plus
Query 33 AAACGAGAATGTCATTCTCAGACGATTGTACATCTCC-ATCGGAAAAGAATCGAGCTCGT 91
|||||| ||||||||||||||||||| ||||||||| | |||| |||||||||||||||
Sbjct 1 AAACGAAAATGTCATTCTCAGACGATCCTACATCTCCGA-CGGAGAAGAATCGAGCTCGT 59
Query 92 ACGAGTCAAGAACCACGAGAGCGCCCTCAAGATTTGTCTTTCTTGTCATCCAAGGTAACA 151
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 60 ACGAGTCAAGAACCACGAGAGCGCCCTCAAGATTTGTCTTGCTTGTCATCCAAGGAAACA 119
Query 152 GAGAAGCAAATTATGAGCCAAGAACCGTTTGAAACGTCTTGCTCCTCTGTTTCTCCGATG 211
|||||| | | |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 120 GAGAAG-A------G--CCAAGAACCGAATGAAACGTCTGGCTCCTCTGTTTCTCCGATG 170
Query 212 AACAGAGACAAAGAAGCCTTTAACAGTCGACATGGTCCATTCTCGAAAAACCAAAACTAC 271
|||||| ||||||||||||| || | ||||||||| || |||||||||||||||| |||
Sbjct 171 AACAGATACAAAGAAGCCTTAAAAAATCGACATGGCCCGGTCTCGAAAAACCAAAATTAC 230
Query 272 ---TTCGAAAGTAATGACATCACCATGAACACTGAAAACCTGCTAAATCCTTTCCATTTC 328
|||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 231 GACTTCGAAAGTAATAACATCACCATCAACACTGAAAACCTGCTAAATCCTTTCGGTGTC 290
Query 329 GGAGGAGGTTCT 340
|||||||| |||
Sbjct 291 GGAGGAGGGTCT 302
> Ahg352538 jgi|Araly1|352538|fgenesh1_pg.C_scaffold_6003131
Length=1305
Score = 147 bits (79), Expect = 2e-34
Identities = 373/508 (73%), Gaps = 47/508 (9%)
Strand=Plus/Plus
Query 395 GGTGAAGAACATGGCACAAACAATTCTGACACTTTGGGAGACCCAAG--TAACATTTCTC 452
||||||| | |||||||| ||| || || | |||| ||| | |||| | | ||| ||
Sbjct 781 GGTGAAGGATATGGCACACACACTTGTGGCCCTTT-GGA-AAACAAGATTGATATTGCTG 838
Query 453 TTCGTTGTTTTGGGAGCATTGAATCCA-TATTGAAGGTAGCAAGAGATGGAA-TAGAGAT 510
|| ||| |||||| | | ||| ||| | || |||| | || |||||| | || | |||
Sbjct 839 TTGGTTCTTTTGGAAACGTTGGATCGATTA-TGAACGCAGAAAGAGA-GAAAGAAAAGAC 896
Query 511 TACGATGATGCCTATCCCTAGACTTGTCAACAACGCACCTCAATGGACCATCAAGAAG-A 569
| |||||| |||| ||||||| |||| | | ||||| ||||||||||| |||||| |
Sbjct 897 TGTGATGATCCCTACCCCTAGATTTGT---CGAGGCACCACAATGGACCATAAAGAAGAA 953
Query 570 GACTGACCGAGCATAATGTTAACCCTAC-TTATGGCCA-ACTTCGTCTGCCCAGA-AGCT 626
| |||||| || | || ||| ||| | |||| | || |||| |||| | | | ||||
Sbjct 954 G-CTGACCCAGTACGATACTAATCCT-CATTAT-GACAGACTTATTCTG-CAAAAGAGCT 1009
Query 627 TCTTCGAACAGCAGATTCGAGGACATCTGCCTGAAGCTGA-T---------T--T-G-CA 672
||| || |||| ||| || ||||| ||||| |||| || | | | | |
Sbjct 1010 CCTTTGATGAGCACATTGGAAGACATTTGCCTAAAGCAGATTACCAAAAGGTAGTAGATA 1069
Query 673 AAAGCGG-A-CTC-ATTGTTAAGGTATAGGACAACGACAC-GAGCACAATGCATGAGCTG 728
||| ||| | | | | |||||| ||||| ||| ||||||| || ||||||||||||||||
Sbjct 1070 AAATCGGAACCACGACTGTTAACGTATATGACTACGACACGGA-CACAATGCATGAGCTG 1128
Query 729 CGTCTGGCAGTACA-ATATACCTATGTTCTAACGG-GTGACTGGCTGGAAGATTTTATCC 786
||||||| | || | | | | ||||| ||||| || ||| ||||||||| ||||| | |
Sbjct 1129 CGTCTGGAATTAGAGA-AAAGCTATGGTCTAA-GGAGTGGTTGGCTGGAACATTTTGTTC 1186
Query 787 AAAAGGAGAAGTTTGAAAG-AAAGA-GACGATATAGGACTCTTATGGGATTCTTCTGCTT 844
|||||| | ||| | | ||| | || || || |||||||||||||||||||||||||
Sbjct 1187 -GCAGGAGATGCTTG-AGGCAAA-ACGAAGAGATTGGACTCTTATGGGATTCTTCTGCTT 1243
Query 845 CTAGGCTTCACTTTGGCGTGATTGCTCG 872
||||| |||| |||||||| ||| ||||
Sbjct 1244 CTAGGATTCAGTTTGGCGTCATTTCTCG 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5