BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36930.1

Length=787
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg345419 jgi|Araly1|345419|fgenesh1_pg.C_scaffold_4001761           555    2e-157


> Ahg345419 jgi|Araly1|345419|fgenesh1_pg.C_scaffold_4001761
Length=357

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 334/351 (95%), Gaps = 0/351 (0%)
 Strand=Plus/Plus

Query  87   ATGGGTAGATGTCCGACTAGAAAAGTGAAGAAGAGGAGATTATCTCACAAAACAGCTCGC  146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGGTAGATGTCCGACTAGAAAAGTGAAGAAGAGGAGATTATCTCACAAAACAGCTCGT  60

Query  147  CGTGACAAATTCGAAGTCAAAGGCGATGACTTGGTTTACACAGAGTTGCGTAAACCGGAG  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGTGACAAATTCGAAGTCAAAGGCGATGACTTGGTTTACACAGAGTTGCGTAAACCGGAG  120

Query  207  ACGGAGATTAAGCCGTTACAGCTTGACGAGGATTTGCCTGGAATGGGTCAATTCTACTGC  266
            |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  ACGGAGATTAAGCCTTTCCAGCTTGATGAGGATTTGCCTGGAATGGGTCAATTCTACTGC  180

Query  267  TTACACTGCGATCGATACTTCTCCAACGTATCAGTGAGGGATGATCATTTCAAGACTAAG  326
            ||||||||||| |||||||||||||| | ||||||| || ||||||||||||||||||||
Sbjct  181  TTACACTGCGACCGATACTTCTCCAATGCATCAGTGCGGAATGATCATTTCAAGACTAAG  240

Query  327  AAACACAAGAAGCGTGTGAATATGATGATGGGACAAGCGCCACACTCGCAACTCGATGCA  386
            |||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||| 
Sbjct  241  AAACACAAGAAGCGTGTGAAGATGATGAAAGGACCAGCGCCACACTCGCAACTCGATGCC  300

Query  387  GATTTAGCCGGGGGAATGGGGATGCCGGACAATGGCCCAAAGCTGATGTCT  437
            ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct  301  GATTTAGCCGGTGGAATGGGAATGCCGGACAATGGTCCAAAGCTGATGTCT  351


 Score =  283 bits (153),  Expect = 1e-75
 Identities = 194/213 (91%), Gaps = 6/213 (3%)
 Strand=Plus/Plus

Query  474  GAGGATTTACCTGGAATGGGTCAATTCAACTGCTTACTCTGCCATCGGA-ACTTCTCCAA  532
            |||||||| |||||||||||||||||| ||||||||| |||| | | || ||||||||||
Sbjct  148  GAGGATTTGCCTGGAATGGGTCAATTCTACTGCTTACACTGCGA-CCGATACTTCTCCAA  206

Query  533  TGCATCAGTGATGG-ATTATCATTTCAAGACTAAGAAACACAAAAAGCGTGTGAAGAAGA  591
            ||||||||||  || || ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct  207  TGCATCAGTG-CGGAATGATCATTTCAAGACTAAGAAACACAAGAAGCGTGTGAAGATGA  265

Query  592  T-AGAGCGACCAGCGCCACACTCGCAACTCGATGCAGATTTAGCTGGTGGAATGGGAATG  650
            | | || |||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  266  TGAAAG-GACCAGCGCCACACTCGCAACTCGATGCCGATTTAGCCGGTGGAATGGGAATG  324

Query  651  CCAGACAATGGTCCAAAGCTGATGTCTGCCTGA  683
            || ||||||||||||||||||||||||||||||
Sbjct  325  CCGGACAATGGTCCAAAGCTGATGTCTGCCTGA  357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29049662754


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5