BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36950.1
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482676 jgi|Araly1|482676|fgenesh2_kg.4__1736__AT2G36950.1 1871 0.0
> Ahg482676 jgi|Araly1|482676|fgenesh2_kg.4__1736__AT2G36950.1
Length=1433
Score = 1871 bits (1013), Expect = 0.0
Identities = 1316/1454 (91%), Gaps = 54/1454 (4%)
Strand=Plus/Plus
Query 1 TTACTCTCGTTCAAACAATTCTTCGTCCTATTAAATACaaaaaat-aaaaat-----cct 54
||||||||||||||||| |||||| |||| ||||||||||||||| |||||| ||
Sbjct 1 TTACTCTCGTTCAAACATTTCTTCATCCT-TTAAATACAAAAAATAAAAAATAAAAACC- 58
Query 55 ta-aaaaTATATCCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTCCCAAAGTT 113
|| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 59 TAGAAAATA-A-CCTTATCTTCAACCAAGAATGGGAGAGGTCCAAGAAGGTGCCAAAGTT 116
Query 114 GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTTGAGACTACTGACGGCAAGCCA 173
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 117 GAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTCGAGACTACGGACGGCAAGCCA 176
Query 174 AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAGCACCACCGGTCGCCGCGGTTGTCTCT 233
|||||||||||||||||||||||||||||||||| || || | ||||| | ||
Sbjct 177 AAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAG--CC-CC-G--GCCGC------CGCT 224
Query 234 GCCTTTGTTTACAAAGTGGATATGCACTGTGAAGGCTGCGCTAAGAAGATAAAGCGAATG 293
||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 225 GCCTTTGTTTACAAAGTTGATCTGCACTGCGAAGGCTGCGCTAAGAAGATTAAGCGAATG 284
Query 294 GTTAAGCACTTTGATGGAGTGAAAGATGTGACGGCAGATACTGGTGGAAATAAGCTTTTG 353
|| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||
Sbjct 285 GTGAAGCACTTTGATGGAGTGAAAGATGTGACGGCGGATACAGGTGGTAATAAGCTTATG 344
Query 354 GTGGTCGGAAAGATTGATCCAGTGAAACTCCAGGAGAAGTTGGAGGAGAAAACCAAGAGA 413
|||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||
Sbjct 345 GTGGTCGGAAAGATTGATCCGGTGCAACTCCAGGAGAAGTTAGAGGAGAAAACTAAGAGA 404
Query 414 AAGGTGGT--T---C--T----CGCGA-ATCCACCGCCAAAGGTAGAGGGACCTGTTGCT 461
|||||||| | | | ||| | | |||||||||||||||||||||||||||||
Sbjct 405 AAGGTGGTACTCACCAATCCACCGCCACCTTCACCGCCAAAGGTAGAGGGACCTGTTGCT 464
Query 462 GCCGCCGTTGGAGAGAAGAAAGCCGATGGTGGAGATAAGGAGGCGGCTCCTCCTGCTCCT 521
||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| || ||
Sbjct 465 GCCGCCGTTGGAGAGAAGAAAGCCGATGGAGGAGATAAGGCGGCGGTTCCTCCTCCTGCT 524
Query 522 GCTCCGGCAGCTCCAAAAGAGAGCGT-GGTGCCTTTAAAGATCAGACTACATTGCGAAGG 580
|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 525 GCTCCGGCAGCTCCAAAAGAGAGC-TCCGTGCCTTTAAAGATCAGACTACATTGTGAAGG 583
Query 581 ATGTATTCAGAAAATCAAGAAAATAATATTGAAAATCAAAGGAGTCGAAACAGTGGCTAT 640
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 584 ATGTATTCAGAAAATCAAGAAAATAATATTAAAAATCAAAGGGGTCGAAACCGTGGCTAT 643
Query 641 TGACGGAGCTAAAGACGTGGTGACGGTTAAAGGAACGATAGACGTTAAAGAACTTGTGCC 700
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 644 TGACGGAGCTAAAGACGTGGTGACGGTGAAAGGAACGATAGACGTTAAAGAACTTGTGCC 703
Query 701 TCTACTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA 760
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TCTCCTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGA 763
Query 761 CGGAGCCGCCGAGAATAAGAAGACGGAAGCTGCCGCTCCTGACGCAAAGAAAGAGGCTCC 820
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 764 CGGAGCCGCCGAGAAGAAGAAGACGGAAGCCACCGCTCCTGACGCAAAGAAAGAGGCTCC 823
Query 821 GTCCGCCGGAGTTAACGAAGCaaagaaggaaggaagtgacggtggagagaagaaaaaaga 880
| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 824 GACCGCCGGAGTTAACGAAGCAAAGAAGGAAGGAAATGACGGTGGAGAGAAGAAGAAAGA 883
Query 881 ggttggagacggcggagagaagaagaaagaaggtggtgacggcggagagaaa-aagaaag 939
|| ||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||
Sbjct 884 GGCCGGAGACGGCGGAGAGAAAAAGAAAGAAGCTGGTGACGGCGGAGA-AAAGAAGAAAG 942
Query 940 aagccggagacggaggagagaagaagaaagaTGGCGGAGG------TGTGCCGGCCCCGG 993
|||| ||||||||||||||||||||| ||| ||||||||| ||||||||| ||||
Sbjct 943 AAGCTGGAGACGGAGGAGAGAAGAAGGAAGGTGGCGGAGGAGGAGGTGTGCCGGCGCCGG 1002
Query 994 TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCAGCTTATCCAACGGCTCCTATGC 1053
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1003 TGGCGATGGTGAATAAGATGGATTATTATGGGTACTCATCTTATCCAACGGCTCCGATGT 1062
Query 1054 ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGACAGGTCAGAATTATCCAG 1113
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
Sbjct 1063 ATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGGGAGGTCAGAGTTATCCCG 1122
Query 1114 TGGGAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCAAGTGAGAGTTACGTGCCGT 1173
||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 1123 TGGCAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCGACTGAGAGTTACGTGCCCT 1182
Query 1174 ACGCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAATCCCAATGGTTGCT 1233
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1183 ACTCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAACCCCAATGGCTGTT 1242
Query 1234 CTGTTATGTAATAATGGGGTTAAACTGTAAATATAAGAAACTATAAGGGTTTAAAACATA 1293
| |||||||||||||||||||||| || |||||||||||||| |||||||||| ||||
Sbjct 1243 CCGTTATGTAATAATGGGGTTAAATTGAAAATATAAGAAACTCTAAGGGTTTATG-CATA 1301
Query 1294 ATTGTGGGAACACAAAACTTATGTTAAAATTTTGAAAGTCTACTTTGAGCCAGCGAATTC 1353
| ||||| ||||||||||||| || ||| ||||||||||| | |||||||||||||||||
Sbjct 1302 AATGTGGAAACACAAAACTTAGGT-AAATTTTTGAAAGTCGAGTTTGAGCCAGCGAATTC 1360
Query 1354 TGACGTGTAACATTGTTCCTTAAATAGTTAGtt--tt-tttC---AATTATTGAATAATT 1407
||||||||||| ||||||||| ||||||||| || ||| ||| ||||||||||
Sbjct 1361 TGACGTGTAACGTTGTTCCTTTGTTAGTTAGTTAGTTCTTTGGGGAATG-TTGAATAATT 1419
Query 1408 AATTGTTTTACTTT 1421
| || ||||||||
Sbjct 1420 ACTTACTTTACTTT 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53135891775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5