BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36970.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321400 jgi|Araly1|321400|fgenesh1_pm.C_scaffold_4001457 2257 0.0
> Ahg321400 jgi|Araly1|321400|fgenesh1_pm.C_scaffold_4001457
Length=1464
Score = 2257 bits (1222), Expect = 0.0
Identities = 1383/1462 (95%), Gaps = 5/1462 (0%)
Strand=Plus/Plus
Query 45 ATGGAGAGAGCAAAGTCGAGGAAGCCTCATATCATGATGATACCATACCCACTTCAAGGT 104
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGAGAGCAAAGTCGAGGAAGCCTCATATCATGATGATACCATATCCACTTCAAGGT 60
Query 105 CACGTTATCCCTTTTGTCCACTTAGCCATCAAACTTGCTTCTCATGGCTTCACCATCACT 164
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CACGTTATACCTTTTGTCCACTTAGCCATCAAACTAGCTTCTCATGGCTTCACCATCACT 120
Query 165 TTCGTCAACACCGACTCCATCCACCACCACATCTCCACCGCTCACCAAGATGACGCCGGT 224
|||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||
Sbjct 121 TTCGTCAACACCGACTCCATCCACCACCACATCTCCACGGCTCGTCACGGTGACGCCGGT 180
Query 225 GACATCTTCTCCGCCGCTCGCAGCTCCGGCCAGCACGACATACGTTACACCACCGTGAGC 284
|||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||| |
Sbjct 181 GACATCTTCTCCGCCGCTCGCAGCTCCGGCAAGCTCGATATACGTTACACCACTGTGACC 240
Query 285 GACGGCTTCCCTTTAGACTTTGACCGGTCACTGAACCATGACCAGTTTTTCGAAGGCATT 344
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GACGGCTTCCCTTTGGACTTTGACCGGTCACTTAACCATGACCAGTTTTTCGAAGGCATT 300
Query 345 CTCCACGTCTTCTCTGCCCACGTGGATGATCTCATCGCCAAACTCTCCCGCCGTGATGAT 404
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||
Sbjct 301 CTCCACGTCTTCTCTGCCCACGTGGATGATCTCATCGCTAAACTCTCCCACCGGGACGAT 360
Query 405 CCTCCCGTGACTTGCTTGATCGCCGACACGTTTTATGTTTGGTCATCTATGATTTGCGAC 464
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTCCGGTAACTTGCTTGATCGCCGACACGTTTTATGTTTGGTCATCTATGATTTGCGAC 420
Query 465 AAGCACAACCTTGTAAATGTCTCGTTTTGGACCGAACCTGCCTTGGTCCTCAATCTCTAT 524
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AAGCACAACCTAGTTAATGTCTCGTTTTGGACTGAACCTGCCTTGGTCCTCAATCTCTAT 480
Query 525 TATCACATGGATCTCCTCATATCTAACGGTCATTTCAAATCTCTTGATAATCGTAAAGAC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TATCACATGGATCTCCTCATATCTAACGGTCATTTCAAATCTCTTGATAATCGTAAAGAC 540
Query 585 GTGATCGATTACGTACCAGGGGTTAAAGCAATAGAACCAAAGGACTTGATGTCATATCTT 644
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GTGATCGATTACGTACCAGGGGTTAAAGCAATAGACCCAAAGGACTTGATGTCATATCTT 600
Query 645 CAAGTAAGCGACAAAGACGTAGACACAAATACAGTAGTATACAGAATATTATTCAAGGCC 704
||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 601 CAAGTAAGCGAGAAAGACGTAGACACAAATACAGTGGTCTATAGAATATTATTCAAGGCC 660
Query 705 TTTAAAGACGTCAAGAGAGCCGACTTCGTCGTATGCAACACGGTGCAAGAGCTCGAACCA 764
||||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||
Sbjct 661 TTTAAAGACGTCAAGAGAGCCGATTTTGTCTTATGCAACACGGTGCAAGAACTCGAACCA 720
Query 765 GACTCTCTCTCGGCTCTACAAGCCAAACAACCGGTTTACGCTATCGGTCCGGTTTTCTCA 824
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GACTCTCTCTCGGCTTTACAAGCCAAACAACCGGTTTACGCTATCGGTCCGGTTTTCTCA 780
Query 825 ACTGATTCGGTAGTTCCCACAAGCTTATGGGCCGAGTCAGACTGTACCGAGTGGCTTAAG 884
||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 ACTCATTCGGTTGTCCCCACAAGCTTATGGGCCGAGTCAGACTGCACCGAGTGGCTTAAG 840
Query 885 GGCCGGCCCACTGGGTCAGTTCTCTACGTCTCGTTTGGTAGCTATGCACATGTTGGTAAG 944
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGCAGGCCCACCGGGTCGGTTCTCTACGTCTCGTTTGGTAGCTATGCACATGTTGGTAAG 900
Query 945 AAGGAGATTGTTGAGATAGCTCATGGGCTTTTGCTTAGTGGGATTAGTTTCATTTGGGTT 1004
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAAGAGATTGTTGAGATAGCTCATGGGCTTTTGCTTAGTGGGATTAGTTTCATTTGGGTT 960
Query 1005 TTACGTCCGGATATAGTTGGATCCAACGTA-CCAGATTTTCTTCCAGCCGGGTTTGTGGA 1063
|||||||||||||||||||||||| ||| | || ||||||||||||| |||||||||||
Sbjct 961 TTACGTCCGGATATAGTTGGATCCGACG-AGCCGGATTTTCTTCCAGTTGGGTTTGTGGA 1019
Query 1064 CCAAGCCCAAGATCGAGGTCTTGTGGTCCAATGGTGCTGCCAGATGGAAGTTATTTCAAA 1123
|||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||
Sbjct 1020 CCAAGCCCAAGATCGAGGTCTTGTGGTCCAGTGGTGTTGCCAGATGGCAGTAATTTCAAA 1079
Query 1124 TCCGGCCGTGGGAGGGTTTTTCACACATTGTGGATGGAATTCAATTCTAGAGAGCGTTTG 1183
||| || |||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1080 TCCAGCTGTGGGAGGTTTTTTTACACATTGTGGATGGAATTCAATTCTAGAGAGTGTTTG 1139
Query 1184 GTGTGGTTTGCCTTTGTTGTGTTATCCACTTTTGACAGATCAGTTCACGAATAGGAAGCT 1243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 GTGTGGTTTGCCTTTGTTGTGTTATCCGCTTTTGACAGATCAGTTCACGAATAGGAAGCT 1199
Query 1244 TGTGGTCGATGATTGGTGCATTGGGATTAATCTTTGTGAGAAGAAGACAATCACAAGGGA 1303
|||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1200 TGTGGTTGATGATTGGTGCATTGGGATTGACCTTTGTGAGAAGAAGACGATCACAAGGGA 1259
Query 1304 CCAAGTCTCAGCGAATGTTAAAAGATTGATGA--A-TGGAGAAACTTCAAGTGAGCTAAG 1360
||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 1260 CCAAGTCTCGGCGAATGTTAAAAGATTGATGATGAATGGAGAAACTTCAAGTGAGCTGAG 1319
Query 1361 AAACAATGTTGAAAAGGTTAAACGTCATCTCAAAGATGCGGTTACAACCGTTGGATCTTC 1420
||| || |||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1320 AAAGAACGTTGAAAAGGTTAAACGTCATCTCAAAGCTGCGGTTACAGCCGTTGGATCTTC 1379
Query 1421 GGAGACGAATTTTAACTTGTTTGTTAGTGAGGTCCGAAATAGAATAGAAACTAAATTGTG 1480
|||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| ||
Sbjct 1380 GGAGACGAATTTTAACACGTTCATTGGTGAGGTCCGAGATAGAATAGAAACTAAATTATG 1439
Query 1481 TAATGTAAATGGACTAGAAATA 1502
||||||||||||||| ||||||
Sbjct 1440 TAATGTAAATGGACTGGAAATA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5