BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G36985.1

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482681 jgi|Araly1|482681|fgenesh2_kg.4__1741__AT2G36985.1         477    3e-134


> Ahg482681 jgi|Araly1|482681|fgenesh2_kg.4__1741__AT2G36985.1
Length=321

 Score =  477 bits (258),  Expect = 3e-134
 Identities = 302/322 (94%), Gaps = 7/322 (2%)
 Strand=Plus/Plus

Query  25   aaCTCTTCCATTTCTTGCACTTTTTTATATTTTGGTCGGACTCAC----TAAGAGCAGAA  80
            |||||||| |||||||||||||||||||||| |||||||||||||    |||||| ||||
Sbjct  1    AACTCTTCAATTTCTTGCACTTTTTTATATTGTGGTCGGACTCACAAATTAAGAGAAGAA  60

Query  81   ACAAATCAATGGCACCGGAGGAGAATGGCACGTGTGAGCCGTGCAAGACTTTTGGGCAAA  140
            || |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct  61   ACCAATCAATGGCACCGGAGGAGAAAGGCACGTGTGAGCCGTGCAAGACCTTTGGGCAAA  120

Query  141  AGTGCAGCCATGTCGTGAAGAAACAAAGAGCCAAGTTTTACATTCTTCGCCGTTGTATCG  200
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  121  AGTGCAGTCATGTCGTGAAGAAACAAAGAGCCAAGTTTTACATTGTTCGCCGTTGTATCG  180

Query  201  CCATGTTAGTTTGCTGGCACGACCAGAACCACGACCGCAAAGACTCTTGATTACTTTCTT  260
            |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct  181  CCATGTTAGTCTGCTGGCACGACCACAACCACGACCGCAAAGACTCTTGATTATTTTC-T  239

Query  261  CTTATTGGATTGTTATCTTCATATTTTAAAAATAAT-T-TATCTACATATTAATGTGCAT  318
            ||||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct  240  CTTATTGGATTGTCATCTTCATATTTTAAAAATAATATATATCTACATATCAATGTGCAT  299

Query  319  ACGTATATTAGAGAAGATTGAA  340
            ||||||||||||||||||||||
Sbjct  300  ACGTATATTAGAGAAGATTGAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14880679710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5