BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37000.1
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482683 jgi|Araly1|482683|fgenesh2_kg.4__1743__AT2G37000.1 750 0.0
> Ahg482683 jgi|Araly1|482683|fgenesh2_kg.4__1743__AT2G37000.1
Length=698
Score = 750 bits (406), Expect = 0.0
Identities = 567/642 (88%), Gaps = 22/642 (3%)
Strand=Plus/Plus
Query 9 CTCCTTTAGTAACCCTAAGATTCTCTCTGTGAATC--------CTTGTTCATCGTCACTG 60
||||||||| |||||||||||| ||||||| |||| |||||||||| ||||||
Sbjct 1 CTCCTTTAGGAACCCTAAGATTTTCTCTGTTAATCAGAAAAAGCTTGTTCATCATCACTG 60
Query 61 AAATTAGTTTACAAAATCGACGAATTCGGAGATGATTTTTCAGAA-TGTGTGCAGAAATG 119
||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct 61 AAATTAGTTTACAAAATCGACGAATTCGGAGATGATTTTTCAGAAAT-TGTGCACAAATG 119
Query 120 AGTCCAACTTCAACGCTATAGCTTCCGAATCGCGTTCCCAAACGCAGTTCGGTGTTTCGA 179
|||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 120 AGTCCAACCTCAACGCTATAGCTTCCAAATCGCGTTTTCAAACGCAGATCGGTGTTTCGA 179
Query 180 AATCCTCCTC-GAGCGGCGGCGGAT-GTATCTCCGCCAGGACTAAAGACCGTCACACGAA 237
||||||||| | ||||| |||| | |||||||||||||| |||||||||||||||| ||
Sbjct 180 AATCCTCCTTTG-GCGGCTGCGG-TCGTATCTCCGCCAGGTCTAAAGACCGTCACACTAA 237
Query 238 GGTTAACGGACGAAGCCGTCGAGTTACGATGCCGGCTCTCGCCGCCGCTAGGATTTTCCA 297
|||| | ||| |||| |||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct 238 GGTTGAGGGAAGAAGTCGTCGAGTTATGATGCCGGCTCTCGTCGCCGCTAGGATTTTTCA 297
Query 298 GTTAACGCGTGAGCTCGGTCACAAAACTGAAGGAGAAACCATCGAATGGCTTCTTAGTCA 357
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 298 GTTGACGCGTGAGCTCGGTCACAAAACTGATGGAGAAACCATTGAATGGCTTCTTAGTCA 357
Query 358 AGCTGAACCGTCGATTATTGCCGCCACTGGCTACGGGACTAAGCTC-ATTTCGAATTGGG 416
|||||||||||||||||||||||| ||||||| ||||||||||| | |||||||||| ||
Sbjct 358 AGCTGAACCGTCGATTATTGCCGCTACTGGCTCCGGGACTAAGC-CGATTTCGAATTCGG 416
Query 417 TTGATGTTGCGGCGGACGATTCCTCGTCGTCGTCGTCGATGACGTCGCCGCAAACGCAAA 476
||| ||||||||||| |||||||||||| || | |||| | || | |||||
Sbjct 417 TTGGTGTTGCGGCGGTTGATTCCTCGTCGCCGA--T-GATGTT-T-GCTATGAT-GCAAA 470
Query 477 CGCAAACGCCACAATCGCCGAGTTGTAGGTTGGATCTTTGTCAGCCAATCGGAATTCAGT 536
||||||||| | |||||||||| |||| | ||||||| |||||||||||||||| |||||
Sbjct 471 CGCAAACGCAAGAATCGCCGAGCTGTACGCTGGATCTGTGTCAGCCAATCGGAACTCAGT 530
Query 537 ATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCGATGCTTTTAGAGCCGATGACCA 596
||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 531 ATCCGGTGAATGGTTACAGTCATATGCCGTTCACAGCCATGCTTTTACAACCGATGACCA 590
Query 597 CGACGGCGGAATCTGAGGTTGAGATCGCGGAGGAGGAGGAAC 638
|| ||||||| ||||| ||||||||||||| |||||||||||
Sbjct 591 CGGCGGCGGATTCTGACGTTGAGATCGCGGCGGAGGAGGAAC 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35263698225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5