BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37020.2
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901566 jgi|Araly1|901566|Al_scaffold_0004_2216 1112 0.0
> Ahg901566 jgi|Araly1|901566|Al_scaffold_0004_2216
Length=705
Score = 1112 bits (602), Expect = 0.0
Identities = 659/686 (96%), Gaps = 5/686 (1%)
Strand=Plus/Plus
Query 301 ATGGCGGGAGGAGATGGTCAGGTGTCTCATTCGCTTGAGAAGCAGTTCGAGAGTTTCCGT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGGAGGTGATGGTCAGGTGTCTCATTCGCTTGAGAAGCAGTTCGAGAGTTTCCGT 60
Query 361 GTTCAATTGGAAGAATCTGCAGCTTTGAGAGAGCAGATTCGTGCTGTGGTTATGGAGATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCAATTGGAAGAATCTGCAGCTTTGAGAGAGCAGATTCGTGCTGTGGTTATGGAGATT 120
Query 421 GAGTCTGCTACTAGGCTTATTCAAGCTAATCTTCTTCTCGTTCATCAATCGCGTCCTATT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 GAGTCCGCTACTAGGCTTATTCAAGCTAATCTTCTTCTCGTTCATCAATCGCGACCTATT 180
Query 481 CCTGAGGTTATCGAGAAAGCTAAGGAAAAAATCGTTGATTTGAAGCAGTATTATGGTCGG 540
|||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||
Sbjct 181 CCTGAGGTTATCGAGAAAGCCAAGGAAAAAATTGTTGATTTGAAGAAGTTTTATGGTCGG 240
Query 541 CTTGCTGAAATTCTTGAGGAGTGTCCTGGACAATACTATAGGTACCATGGAGACTGGAGA 600
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CTTGCTGAAATTCTTCAGGAGTGTCCTGGACAGTACTATAGGTACCATGGAGACTGGAGA 300
Query 601 AGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTAGAAACTGGAACT 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AGTGAAACACAGGCAGTGGTCTCCCAGCTTGCTTTTATGCACTGGCTTGAAACTGGAACT 360
Query 661 CTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTTGAACAGTTTGGAGTTTGGATTG 720
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CTTCTCGCGCATAAGGAAGCTGAAGAAAAACTTGGGTTGAAGAGTTTGGAGTTTGGATTG 420
Query 721 GAGACAGAAGATTATCTCACTGGAATTTGTTTCATGTCAAACGATTTGCAGCCTAGGTAC 780
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 421 GAGACAGAAGATTATCTCACTGGAATTTGTTTCATGTCAAACGATTTGC--C-TAGGTAC 477
Query 781 GTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTG 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 GTGGTAAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCTTG 537
Query 841 ACAGATCTTCATGCAGCCTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACAGATCTTCATGCAGCCTTTCGCATGCTCAATCTCAGGAACGATTTCCTGCGCAAGAAA 597
Query 901 TTCGACAGTATGAAGTACGACCTAAGAAGAGTGGAAGAAGTTTACTATGATGTCAAGATC 960
|||||||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 598 TTCGACAGTATGAAATATGACCTAAGAAGAGTCGAAGAAGTTTACTACGATGTTAAGATC 657
Query 961 CGAGGTTTGATTTCCGGC-GGAGATC 985
||||||||||||||| | |||||||
Sbjct 658 AGAGGTTTGATTTCCG-CTGGAGATC 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5