BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37025.1 Length=1589 Score E Sequences producing significant alignments: (Bits) Value Ahg482686 jgi|Araly1|482686|fgenesh2_kg.4__1746__AT2G37025.1 1406 0.0 > Ahg482686 jgi|Araly1|482686|fgenesh2_kg.4__1746__AT2G37025.1 Length=1550 Score = 1406 bits (761), Expect = 0.0 Identities = 934/1014 (92%), Gaps = 25/1014 (2%) Strand=Plus/Plus Query 1 ATCGTTGCGGACTTGAAACGCACGTTATATTTGACGGTGTCTTACGTCATTTTGGATTTC 60 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 1 ATCGTTGCGGACTTGAAACGCACGTTATATTACACGGTGTCTTACGTCA-TTTGGATTTC 59 Query 61 AAAACTAAATAAATCAGCTTTTGGAATCCGAAA-C-----AAAGACaaaaaaaCAAAATC 114 |||| |||||||||||||||||||||||| ||| | ||| |||||||||||||||| Sbjct 60 AAAATTAAATAAATCAGCTTTTGGAATCCCAAACCAAAAAAAAAACAAAAAAACAAAATC 119 Query 115 C-AAGTCTAACAGTCGCCATTTCCCCTCCTGCGTCAGTGTTCTTCGTCTCCTCTCGTCGT 173 | ||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 120 CTAAGTCCAACAGTCGCCATTTCACCTCCTGCGTCAGAGTTCTTCGTCTCCTCTCGTCGT 179 Query 174 CTCTCTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGAAACAA 233 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 180 CTCTGTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGACACAA 239 Query 234 CACCCG-GTTTTCCTGATACTTTTGCTGGATTCAAATCTGCCAGTGTTGATGAGAATCTT 292 |||| | | |||||||||||||||||||||||||| |||| |||||||||||||| |||| Sbjct 240 CACCAGAG-TTTCCTGATACTTTTGCTGGATTCAAGTCTGGCAGTGTTGATGAGATTCTT 298 Query 293 GGCCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTCATCAT 352 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 299 GGTCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTAATCAT 358 Query 353 GATAATACCGCGGTGGACAGTTTCTTAGGTCTTGGTATGGAGAATATGGGCTTAACCTCC 412 || ||||| |||||| |||||||||||||||| ||||||||||||||||| |||| |||| Sbjct 359 GACAATACTGCGGTGAACAGTTTCTTAGGTCTCGGTATGGAGAATATGGGGTTAAGCTCC 418 Query 413 AAGATGGAGGAGTTTTCACATGGATTTGACGTTAGCTTTCTCCCAGATTATGGTGGAGTT 472 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| | Sbjct 419 AAGATGGAGGAATTTTCTCATGGATTTGACTTTAGCTTTCTCCCAGATTATGGTGGACTA 478 Query 473 AACACTTTTAGCACTCAAGATGTGGAAGCAGGTTTAAAGTTTGAAATTCTTGATGGAATT 532 ||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||| || Sbjct 479 AACTCTTATAGCACTAAAGATGTGGAAGCAGGTTTGAAGTTTGAGATTCTTGATGGATTT 538 Query 533 CTGGATGGAGTTGATGAAGTGGAAGATATCTACGCATCACATGAGCTTTCTTCTATTGTT 592 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 539 CTGGATGGAGTCGATGAAGTGGAAGATATCTACGCATCACATGATCTTTCTTCTATTGGT 598 Query 593 AACCATTTCCCTCCAGAAACTGAAGTCAAGAAGAA--T----GAATTAGAGGGTGACCCC 646 |||||||||| |||||||||||||||||||||||| | |||||||| ||||||||| Sbjct 599 AACCATTTCCTTCCAGAAACTGAAGTCAAGAAGAAAGTATCTGAATTAGATGGTGACCCC 658 Query 647 TATGGTCTTATGAACTTCAGTTCAGAATCTTATTCTCCTGGAATTAGTGGAAGCATCGGA 706 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 659 TATGGTCTTATGAACTTGAGTTCAGAATCTTTTTCTCCTGGAATTAGTGGAAGCATTGGA 718 Query 707 CTCGCGGAGTGGTCAAAAGAAACTGTTCCATATGCTGAATCCCAGATTGTATCCAGCGAA 766 ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 719 CTCTCGGAGTGGTCAAAAGAAACTGTTCCACATGCTGAATCCCAGAATGTATCCAGCGAA 778 Query 767 AAAGTT-AAAGATAGTTGGGA-TACAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 824 || ||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||| Sbjct 779 AA-GTTTAAAGATAGTTTGGACT-CAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 836 Query 825 CATTTATAGGCTCTTGGATTAAACGA---AAGAATCGGAAACAGAAATTGCTCAACACCG 881 | ||||||||||||||| |||||||| || ||||||||| |||| ||||||||||||| Sbjct 837 CTTTTATAGGCTCTTGGGTTAAACGAGGCAAAAATCGGAAAAAGAATTTGCTCAACACCG 896 Query 882 CTTGTAGTAGATTAGATTCTTCTCGTGAAAGAAAGTCTTGCGAGTCCTATGACTTCAGGC 941 ||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 897 CTTGTAGGAGATTAGATTCTTCTCGTGAAAGAATGTCTTGCGTGTCCTATGACTTCAGGC 956 Query 942 CCCGGAAAGGACCTATGAAGAAATACATTCACACTTCAA-TGGAGAAAACATTT 994 ||||||||||||||||||||||||||||||||| ||||| || |||| |||||| Sbjct 957 CCCGGAAAGGACCTATGAAGAAATACATTCACATTTCAACTG-AGAATACATTT 1009 Score = 704 bits (381), Expect = 0.0 Identities = 486/534 (91%), Gaps = 17/534 (3%) Strand=Plus/Plus Query 1057 AACCAAAAGTGACAGGAGAAAGAATCAGAGGATATGGACTCTTGATGAAGTAATGAATTT 1116 ||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||| || Sbjct 1033 AACCAGAAGTGACAGGAGAAAGAATCAGAGGATGTGGACTGTTGATGAAGTGATGAAGTT 1092 Query 1117 GGTTGATGGTATTTCTCACTTTGGTGTTGGGAAATGGACCGATATAAAGAACCACTTCTT 1176 ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1093 GGTTGATGGTATTTCTCACTTTGGTGTAGGAAAATGGACCGATATAAAGAACCTCTTCTT 1152 Query 1177 TCATTATGCAGCACACCGCAAACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1236 ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1153 TCATTCTGCAGCGCACCGCACACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1212 Query 1237 AGCAAGTTATAACGAAAAGCATAACGATGGACAGGCTGAAGAAAAACGAAAGTCAGTGGC 1296 ||||||||||||| | || | || | |||||||||||||||||||||||||||| Sbjct 1213 AGCAAGTTATAAC-----G-AT-A-GA--G--AGGCTGAAGAAAAACGAAAGTCAGTGGC 1260 Query 1297 TCGCTCTATACCGAAGGATATTCTACATCGTGTAAGAGAACTTGCTTCACTCCATCCATA 1356 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1261 TCGCTCTATACCGAAGGAAATTCTACATCGTGTTAGAGAACTTGCTTCACTCCATCCATA 1320 Query 1357 TCCCTTCTCCAAATCACCGTGTATT-GTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1415 ||| |||||||||||| | ||| || |||||||||||||||||||||||||||||||||| Sbjct 1321 TCCGTTCTCCAAATCATCTTGT-TTCGTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1379 Query 1416 AGAACAAGAAGAAGAAGAGTGGATGATATTGATAGTCTTCATGGAGAAAGTCTAGAGAAG 1475 ||| |||||||||| |||| ||||||| ||||| ||||||||||||| ||||||||| Sbjct 1380 GGAAGAAGAAGAAGAGGAGT---TGATATTAATAGTTTTCATGGAGAAAGCCTAGAGAAG 1436 Query 1476 CTATATAGATACTTGAATCGTTTTAACTGTGTTGGGAAGTTGTTCCATGTGAAGTTTCTG 1535 || || ||||||| ||||||||||| ||| |||| |||||||||||||||||||||||| Sbjct 1437 CTGTAAAGATACTAAAATCGTTTTAATTGTCTTGGAAAGTTGTTCCATGTGAAGTTTCTG 1496 Query 1536 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTAGCTTATTCCCTCT 1589 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1497 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTTGCTTATTTCCTCT 1550 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59535052935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5