BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37025.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482686 jgi|Araly1|482686|fgenesh2_kg.4__1746__AT2G37025.1 1406 0.0
> Ahg482686 jgi|Araly1|482686|fgenesh2_kg.4__1746__AT2G37025.1
Length=1550
Score = 1406 bits (761), Expect = 0.0
Identities = 934/1014 (92%), Gaps = 25/1014 (2%)
Strand=Plus/Plus
Query 1 ATCGTTGCGGACTTGAAACGCACGTTATATTTGACGGTGTCTTACGTCATTTTGGATTTC 60
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1 ATCGTTGCGGACTTGAAACGCACGTTATATTACACGGTGTCTTACGTCA-TTTGGATTTC 59
Query 61 AAAACTAAATAAATCAGCTTTTGGAATCCGAAA-C-----AAAGACaaaaaaaCAAAATC 114
|||| |||||||||||||||||||||||| ||| | ||| ||||||||||||||||
Sbjct 60 AAAATTAAATAAATCAGCTTTTGGAATCCCAAACCAAAAAAAAAACAAAAAAACAAAATC 119
Query 115 C-AAGTCTAACAGTCGCCATTTCCCCTCCTGCGTCAGTGTTCTTCGTCTCCTCTCGTCGT 173
| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 120 CTAAGTCCAACAGTCGCCATTTCACCTCCTGCGTCAGAGTTCTTCGTCTCCTCTCGTCGT 179
Query 174 CTCTCTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGAAACAA 233
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 CTCTGTTTGTGTAAAAACTTGGACCTTGACTTGAAATGGGACCTTTTGGGATGGACACAA 239
Query 234 CACCCG-GTTTTCCTGATACTTTTGCTGGATTCAAATCTGCCAGTGTTGATGAGAATCTT 292
|||| | | |||||||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 240 CACCAGAG-TTTCCTGATACTTTTGCTGGATTCAAGTCTGGCAGTGTTGATGAGATTCTT 298
Query 293 GGCCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTCATCAT 352
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 GGTCATTCAATGGAGGATAAAATGAGTGACATGAAGCATTTCCTAATGGATCCTAATCAT 358
Query 353 GATAATACCGCGGTGGACAGTTTCTTAGGTCTTGGTATGGAGAATATGGGCTTAACCTCC 412
|| ||||| |||||| |||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 359 GACAATACTGCGGTGAACAGTTTCTTAGGTCTCGGTATGGAGAATATGGGGTTAAGCTCC 418
Query 413 AAGATGGAGGAGTTTTCACATGGATTTGACGTTAGCTTTCTCCCAGATTATGGTGGAGTT 472
||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct 419 AAGATGGAGGAATTTTCTCATGGATTTGACTTTAGCTTTCTCCCAGATTATGGTGGACTA 478
Query 473 AACACTTTTAGCACTCAAGATGTGGAAGCAGGTTTAAAGTTTGAAATTCTTGATGGAATT 532
||| ||| ||||||| ||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 479 AACTCTTATAGCACTAAAGATGTGGAAGCAGGTTTGAAGTTTGAGATTCTTGATGGATTT 538
Query 533 CTGGATGGAGTTGATGAAGTGGAAGATATCTACGCATCACATGAGCTTTCTTCTATTGTT 592
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 539 CTGGATGGAGTCGATGAAGTGGAAGATATCTACGCATCACATGATCTTTCTTCTATTGGT 598
Query 593 AACCATTTCCCTCCAGAAACTGAAGTCAAGAAGAA--T----GAATTAGAGGGTGACCCC 646
|||||||||| |||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 599 AACCATTTCCTTCCAGAAACTGAAGTCAAGAAGAAAGTATCTGAATTAGATGGTGACCCC 658
Query 647 TATGGTCTTATGAACTTCAGTTCAGAATCTTATTCTCCTGGAATTAGTGGAAGCATCGGA 706
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 659 TATGGTCTTATGAACTTGAGTTCAGAATCTTTTTCTCCTGGAATTAGTGGAAGCATTGGA 718
Query 707 CTCGCGGAGTGGTCAAAAGAAACTGTTCCATATGCTGAATCCCAGATTGTATCCAGCGAA 766
||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 719 CTCTCGGAGTGGTCAAAAGAAACTGTTCCACATGCTGAATCCCAGAATGTATCCAGCGAA 778
Query 767 AAAGTT-AAAGATAGTTGGGA-TACAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 824
|| ||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 779 AA-GTTTAAAGATAGTTTGGACT-CAAATGAGTCAGAAGATGACAAGAAACCACTATCCA 836
Query 825 CATTTATAGGCTCTTGGATTAAACGA---AAGAATCGGAAACAGAAATTGCTCAACACCG 881
| ||||||||||||||| |||||||| || ||||||||| |||| |||||||||||||
Sbjct 837 CTTTTATAGGCTCTTGGGTTAAACGAGGCAAAAATCGGAAAAAGAATTTGCTCAACACCG 896
Query 882 CTTGTAGTAGATTAGATTCTTCTCGTGAAAGAAAGTCTTGCGAGTCCTATGACTTCAGGC 941
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 897 CTTGTAGGAGATTAGATTCTTCTCGTGAAAGAATGTCTTGCGTGTCCTATGACTTCAGGC 956
Query 942 CCCGGAAAGGACCTATGAAGAAATACATTCACACTTCAA-TGGAGAAAACATTT 994
||||||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct 957 CCCGGAAAGGACCTATGAAGAAATACATTCACATTTCAACTG-AGAATACATTT 1009
Score = 704 bits (381), Expect = 0.0
Identities = 486/534 (91%), Gaps = 17/534 (3%)
Strand=Plus/Plus
Query 1057 AACCAAAAGTGACAGGAGAAAGAATCAGAGGATATGGACTCTTGATGAAGTAATGAATTT 1116
||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||
Sbjct 1033 AACCAGAAGTGACAGGAGAAAGAATCAGAGGATGTGGACTGTTGATGAAGTGATGAAGTT 1092
Query 1117 GGTTGATGGTATTTCTCACTTTGGTGTTGGGAAATGGACCGATATAAAGAACCACTTCTT 1176
||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 1093 GGTTGATGGTATTTCTCACTTTGGTGTAGGAAAATGGACCGATATAAAGAACCTCTTCTT 1152
Query 1177 TCATTATGCAGCACACCGCAAACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1236
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TCATTCTGCAGCGCACCGCACACCCGTTGATATCAGAGACAAATGGCGTAATCTACTGAA 1212
Query 1237 AGCAAGTTATAACGAAAAGCATAACGATGGACAGGCTGAAGAAAAACGAAAGTCAGTGGC 1296
||||||||||||| | || | || | ||||||||||||||||||||||||||||
Sbjct 1213 AGCAAGTTATAAC-----G-AT-A-GA--G--AGGCTGAAGAAAAACGAAAGTCAGTGGC 1260
Query 1297 TCGCTCTATACCGAAGGATATTCTACATCGTGTAAGAGAACTTGCTTCACTCCATCCATA 1356
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1261 TCGCTCTATACCGAAGGAAATTCTACATCGTGTTAGAGAACTTGCTTCACTCCATCCATA 1320
Query 1357 TCCCTTCTCCAAATCACCGTGTATT-GTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1415
||| |||||||||||| | ||| || ||||||||||||||||||||||||||||||||||
Sbjct 1321 TCCGTTCTCCAAATCATCTTGT-TTCGTTCATGATTCCTCAAGAAGCCGAAGCACTTCAA 1379
Query 1416 AGAACAAGAAGAAGAAGAGTGGATGATATTGATAGTCTTCATGGAGAAAGTCTAGAGAAG 1475
||| |||||||||| |||| ||||||| ||||| ||||||||||||| |||||||||
Sbjct 1380 GGAAGAAGAAGAAGAGGAGT---TGATATTAATAGTTTTCATGGAGAAAGCCTAGAGAAG 1436
Query 1476 CTATATAGATACTTGAATCGTTTTAACTGTGTTGGGAAGTTGTTCCATGTGAAGTTTCTG 1535
|| || ||||||| ||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 1437 CTGTAAAGATACTAAAATCGTTTTAATTGTCTTGGAAAGTTGTTCCATGTGAAGTTTCTG 1496
Query 1536 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTAGCTTATTCCCTCT 1589
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1497 TTAATGAAACCGAGAATGACTTCAATTCAGAAAAGCATTTTGCTTATTTCCTCT 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5