BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G37030.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482688 jgi|Araly1|482688|fgenesh2_kg.4__1748__AT2G37030.1         627    2e-179


> Ahg482688 jgi|Araly1|482688|fgenesh2_kg.4__1748__AT2G37030.1
Length=375

 Score =  627 bits (339),  Expect = 2e-179
 Identities = 363/375 (97%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGAGCAAGTTCATTAAGTCCTGTGAAAAGAAACTGAAAAAGATGACGAGCAAAGTC  60
            |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct  1    ATGAAGAGCAAGTTCATTAAGTCCTGCGAAAAGAAACTGAAAAAGATGACAACCAAAGTC  60

Query  61   ATAATACCTTGTGCGTCTTGCGAGTCATGCTACGAGAGAATTTGCTGGGCATTCAAGAAG  120
            |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct  61   ATAATACCTTGTGCGTCTTGCGAGGCATGCTACGATAGAATTTGCTGGGCATTCAAGAAG  120

Query  121  GAAGCTGAGGTGATTCCAAGAGATGTCCCTAAGGGACATTTGGTTGTCTATGTGGGTGAA  180
            |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  GAAGCTGAGGTGATACCAAGAGATGTCCCTAAGGGACACTTGGTTGTCTATGTGGGTGAA  180

Query  181  GAGTACAAGAGGTTTGTGATAAATATCAACCTGCTTAAACACCCACTCTTCCAAGCATTG  240
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  181  GAGTACAAGAGGTTTGTGATAAAGATCAACTTGCTTAAACACCCACTCTTCCAAGCATTG  240

Query  241  CTGGATCAAGCACAGGATGCTTACGGTTTCAGTGCTGACTCCAGACTATGGATTCCATGC  300
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTGGATCAAGCACAAGATGCTTACGGTTTCAGTGCTGACTCCAGACTATGGATTCCATGC  300

Query  301  AATGAGAGTACTTTCCTCGATGTTGTCCGTTGCGCTGGTGCACCCCAGCATCAGAATAAC  360
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  301  AATGAGAGTACTTTCCTCGATGTTGTCCGTTGCGCTGGTGCTCCTCAGCATCAGAATAAC  360

Query  361  TGCATATGTATCTAG  375
            |||||||||||||||
Sbjct  361  TGCATATGTATCTAG  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5