BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37035.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482689 jgi|Araly1|482689|fgenesh2_kg.4__1749__AT2G37035.1 2556 0.0
> Ahg482689 jgi|Araly1|482689|fgenesh2_kg.4__1749__AT2G37035.1
Length=1661
Score = 2556 bits (1384), Expect = 0.0
Identities = 1576/1669 (94%), Gaps = 11/1669 (1%)
Strand=Plus/Plus
Query 1 ATTCTCTCTCTTCTCGATCTACCCAAAGTAGCGGGAGCGAATAGTAAAACAATGACCGAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATTCTCTCTCTTCTCGATCTACCCAAAGTAGCGGGAGCGAATAGTAAAACAATGTCCGAT 60
Query 61 caccaccaccaccaccataaccaccacGCGCGGCTGAGCCGCCTCCGTACAACAACACAG 120
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ---CACCACCACCACC---ACCACCACGCGCGGCTGAGCCGCCTCCGTACAACAACCCAG 114
Query 121 CTCCTCCGTCAAACAACAtcttctttctcttcccaccctctcactttcatcttcctcact 180
|||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 115 CTCCTCCGTCAAACCACAGCTTCTTTCTCTTCTCACCCTCTCACTTTCATCTTCCTCACT 174
Query 181 ttcctcctcttctctttccattctctcgtcgatcattgctctctcctcttaacatctttc 240
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 175 TTCCTCCTCTTCTCCTTCCACTCTCTCGTCGATCATTGCTCTCTTCTCTTAACCTCTTTC 234
Query 241 gtcgacagtgacccttctcttcgctctctcctctctcgactccctcttaactctcgctcC 300
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 235 GTCGATAGTGACCCTTCTCTTCGCTCTCTCCTCTCTCGCCTCCCTCTTAACTCTCACTCC 294
Query 301 CATACCCCGACGCGCTTCAATCATCACCGACGTGCTCCGTTTCTTCAGCTCACGCGCCTT 360
|||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 295 CATACCCCCACGCGCTTCCACCATCACCGACGTGCTCCGTTTCTTCAGCTCACGCGCCTT 354
Query 361 GGTACCCTCGACGACGACTTCTTCTCCACAGACGAACACGATCCTCATCGCCGATCGCTT 420
|||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 355 GGTACCTTAGACGACGACTTCTTCTCCACCGACGAACACGATCCTCATCGCCGATCTCTT 414
Query 421 CAAGGCTCTTCCTTTCGTTCACCCATCAACGCCACCACTGTATTCCTCTCCGGATTTGAG 480
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||
Sbjct 415 CAAGGCTCTTCCTTTCGTTCACCCATCAACGCTACGACTGTATTTCTCTCCGGATTCGAG 474
Query 481 AGCATTTCTGGCTTCTCTCGTCCTATCATCGATAACGGACTTCTCCTTCCTCAGATCATT 540
||||||||||| || |||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 475 AGCATTTCTGGATTGTCTCGTCCAATCGCCGATAACGGACTTCTCCTTCCTCAAATCATT 534
Query 541 CGCTCCGGTGTCGTTTTGCGGCAGCTTGAGAAGGAAGACCATGGCGGCGATGAAGACGAG 600
|||||||| |||||||| |||||||| |||||||| || | ||||||||||||||| ||
Sbjct 535 CGCTCCGGCGTCGTTTTACGGCAGCTCGAGAAGGACGATCTTGGCGGCGATGAAGAAGAT 594
Query 601 ACGGAATTGGATGAATCTGAGCTCGATCGTGAAAGTGAGAAGAAAGATAAAGACTTTGAG 660
| | |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 595 ATGAAATTGGATGAATCTGAGCTCGATCGTGAAACTGAGAAGAAAGATAAAGAATTTGAG 654
Query 661 AGTTTTGTGGATCTGAAGATGATTTTTAAAGGATTGGAGCTAGGACGT-AGTGACGCAGC 719
||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||| ||
Sbjct 655 AGTTTTGTGGATCTGAAGATGTTTTTTAAAGGATTGGAGTTAGGACGTCA-TGACGCTGC 713
Query 720 GGCTCTGTTCTTCTTGGTGAGCTTTTTATCAGCTGCGTATGGATGGGTGATTCTAGGGTT 779
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 714 GGCTCTGTTCTTCTTGGTGAGCTTTTTATCAGCTGCTTATGGATGGGTGATTTTAGGGTT 773
Query 780 TACAACTGTTTACTCATTGGTGTTGGCGATTATGTTTGTTACTGTAATCAACGATTTGCT 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TACCACTGTTTACTCATTGGTGTTGGCGATTATGTTTGTTACTGTAATCAACGATTTGCT 833
Query 840 TGGTAGGTTTCCTTCGTTTCTTGGGGTTGTTTGGAGAGGTTCAAGATTGGGGTTTAAGAG 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 834 TGGTAGGTTTCCTTCGTTTCTTGGGGTTGTTTGGAGTGGTTCAAGATTGGGGTTTAAGAG 893
Query 900 AGTTACAGGATTTGTTTTAATGAGATGGGCAGTGAGAGATGCTTTGACACAGCTTCTTGG 959
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AGTTACAGGATTCGTTTTAATGAGATGGGCAGTGAGAGATGCTTTGACACAGCTTCTTGG 953
Query 960 TTTATGGTACTTCGGAGAGGTTGAAGATCAGTACTCGTTTTTCAGGCTCTTTGTGAGGTT 1019
||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 954 TTTATGGTATTTTGGAGAGGTTGAAGATCAGTTCTCGTTTTTCAGGCTCTTTGTGAGGTT 1013
Query 1020 AAAGCTGATGCCTTTCACTGTTATGCCGCCATGGATTAGAGGTTTTGAGAAGGAGATATC 1079
|||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1014 AAAGTTGATGCCTTTCACTGTTATGCCGCCATGGATTAGAGGCTTCGAGAAGGAGATATC 1073
Query 1080 TGGTTTCTTGTTCGCTTGGTTTCTACTTGATACACTTGTTGGTTTGATATTAGCTGTTGA 1139
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 GGGTTTCTTGTTCGCTTGGTTTCTACTTGATACGCTTGTTGGTTTGATATTAGCTGTTGA 1133
Query 1140 TGCGTTTGTTGCTATTGTGGATTCGAGAAGGAGAGGAAGGGAGATAGTGAAGGAAGGGAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGCGTTTGTTGCTATTGTGGATTCGAGAAGGAGAGGAAGGGAGATAGTGAAGGAAGGGAA 1193
Query 1200 AAGCTTTGCTTCTGTGATCCAATCTGCGTTGGAAGTTTACTTCATGGCGGCTTGGTTAGT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AAGCTTTGCTTCTGTGATCCAATCTGCGTTGGAAGTTTACTTCATGGCGGCTTGGTTAGT 1253
Query 1260 GTTCTACTTAGCAGCTAAGTGTAAAGATGCACACGCAGATGGTAGGAGGTTTGGGAGAAG 1319
|||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1254 GTTCTACTTAGCAGCTAAGTGTAAAGATGCGCACACAGACAGTAGGAGGTTTGGGAGAAG 1313
Query 1320 AGAAATGGAGAGCTTGATCGATGGGCTGAGATGATAATGAATTGTGGATCTGTAGGATGA 1379
||||||||||| |||||| ||||||||||||||||||| ||||| |||| | |||||| |
Sbjct 1314 AGAAATGGAGAACTTGATTGATGGGCTGAGATGATAATAAATTGGGGATTTCTAGGATAA 1373
Query 1380 GCTTTTTGTTTCCAAAGGAGC-AAACCTTGGCTTCGATGCTTAATGCCAGTGGCGACATC 1438
|||||| |||||||||||| | ||||||||||||| |||||||||||||||||| |||||
Sbjct 1374 GCTTTTGGTTTCCAAAGGA-CTAAACCTTGGCTTCTATGCTTAATGCCAGTGGCTACATC 1432
Query 1439 TCTGTGCTACTAGTTGTCATGACTT-AGGTTCCTTTGGTTTTAGAATTACAGTTGATTGA 1497
||||||| || |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1433 TCTGTGCCACAAGTTGTCATGACTTTAGGTTCCTTTGGTTTTAGAATTACAGTTAATTGA 1492
Query 1498 TAAGAATTGCTAGCAATTCGATGTATGTACGCACCTAGGATTACTTGGGAGCTGTGAAAG 1557
|||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1493 TAAGAATTGCCAACAGTTCGATGTATGTACGCACCTAGGATTACTTGTGAGCTGTGAAAG 1552
Query 1558 AGGGAGAATGATACAACTACTGTGTATAATCATTTGCAAGATTTTCCTTTGTATATATCT 1617
|||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1553 AGGGAGCATGATACAACTACTGTGTATACTCATTTGCAAGATTTTGCTTTGTATATATCT 1612
Query 1618 TGCTGCAGTTTTTGATATCAATACCATGAGGTGATCAtttttttttttt 1666
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1613 TGCTGCAGTTTTTGATATCAATACCATGAGGTGATCAATTTTTTTTTTT 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5