BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37060.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934354 jgi|Araly1|934354|scaffold_402342.1 850 0.0
Ahg938234 jgi|Araly1|938234|scaffold_502425.1 501 3e-141
> Ahg934354 jgi|Araly1|934354|scaffold_402342.1
Length=568
Score = 850 bits (460), Expect = 0.0
Identities = 523/552 (95%), Gaps = 10/552 (2%)
Strand=Plus/Plus
Query 102 GATGGCGGAGTCGCAGGCCAAGAGTCCCGGAGGCTGTGGAAGCCATGAGAGTGGTGGAGA 161
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 GATGGCGGAGTCACAGGCCAAGAGTCCCGGAGGCTGTGGAAGCCATGAGAGTGGTGGAGA 79
Query 162 TCAAAGTCCCAGGTCGTTACATGTTCGTGAGCAAGATAGGTTTCTTCCGATTGCTAACAT 221
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TCAAAGTCCGAGGTCGTTACATGTTCGTGAGCAAGATAGGTTTCTTCCGATTGCTAACAT 139
Query 222 AAGCCGTATCATGAAAAGAGGTCTTCCTGCTAATGGGAAAATCGCTAAAGATGCTAAGGA 281
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 140 AAGCCGTATCATGAAAAGAGGTCTTCCTGCTAATGGCAAAATTGCTAAAGATGCTAAGGA 199
Query 282 GATTGTGCAGGAATGTGTCTCTGAATTCATCAGTTTCGTCACCAGCGAAGCGAGTGATAA 341
|||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||
Sbjct 200 GATTGTGCAGGAATGTGTTTCTGAATTCATCAGCTTCATTACCAGCGAAGCGAGTGATAA 259
Query 342 ATGTCAAAGAGAGAAAAGGAAGACTATTAATGGAGATGATTTGCTTTGGGCAATGGCTAC 401
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 260 ATGTCAAAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGGGCAATGGCCAC 319
Query 402 TTTAGGATTTGAAGACTACATGGAACCTCTCAAGGTTTACCTGATGAGATATAGAGAGAT 461
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 320 TTTAGGATTTGAAGACTACATGGAACCCCTGAAGGTTTACCTGATGAGATATAGAGAGAT 379
Query 462 GGAGGGTGACACAAAGGGATCAGCAAAAGGTGGGGATCCAAATGCAAAGAAAGATGGGCA 521
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 380 GGAGGGTGACACAAAGGGATCAGCAAAAGGTGGGGATGCAAATGCAAAGAAAGATGGGAA 439
Query 522 ATCAAGCCAAAATGGCCAGTTC--TCGC-A-G-CT-TGCT-CACCAAGGTCCTTATGGGA 574
|||||||||||||||||||||| || | | | || | | ||| |||||||||||||||
Sbjct 440 ATCAAGCCAAAATGGCCAGTTCGCTCACCAAGGCTCTTTTTCAC-AAGGTCCTTATGGGA 498
Query 575 ACTCTCAAGCTCAGCAGCATATGATGGTTCCAATGCCGGGAACAGACTAGTATGAGAGGA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 499 ACTCTCAAGCTCAGCAGCATATGATGGTTCCAATGCCGGGAACAGACTAGTAT-A-AGGA 556
Query 635 GTATTCAACTTT 646
|||||||||||
Sbjct 557 TTATTCAACTTT 568
> Ahg938234 jgi|Araly1|938234|scaffold_502425.1
Length=575
Score = 501 bits (271), Expect = 3e-141
Identities = 438/513 (85%), Gaps = 34/513 (7%)
Strand=Plus/Plus
Query 137 GTGGAAGCCATGAGAGTGGTGGAGATCAAAGTCCC-AGGTCGTT-ACATGTTCGTGAGCA 194
||||||||||||||||||| |||||||| || ||| |||||||| | |||||||||||||
Sbjct 56 GTGGAAGCCATGAGAGTGGCGGAGATCAGAG-CCCGAGGTCGTTGA-ATGTTCGTGAGCA 113
Query 195 AGATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAAAGAGGTCTT-CCTGCT- 252
||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||
Sbjct 114 GGATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAGAGAGGT-TTACCT-CTT 171
Query 253 AATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATC 312
||||| ||||| |||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 172 AATGGCAAAATTGCTAAAGATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATC 231
Query 313 AGTTTCGTCACCAGCGAAGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACTATTAAT 372
|| |||||||||||||| || |||||||| || || ||||||||||||||||| || |||
Sbjct 232 AGCTTCGTCACCAGCGAGGCTAGTGATAAGTGCCAGAGAGAGAAAAGGAAGACCATCAAT 291
Query 373 GGAGATGATTTGCTTTGGGCAATGGCTACTTTAGGATTTGAAGACTACATGGAACCTCTC 432
|||||||||||||||||||| ||||| ||| ||||||| ||||| ||||| || || |||
Sbjct 292 GGAGATGATTTGCTTTGGGCTATGGCCACTCTAGGATTCGAAGAGTACATCGATCCCCTC 351
Query 433 AAGGTTTACCTGATGAGATATAGAGAGATGGAGGGTGACAC-AAAGGGATCAGCAAAAGG 491
||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 352 AAGGTTTACCTGATGCGATATAGAGAGATGGAGGGTGACACTAAAGG-ATCAGGAAAAGG 410
Query 492 TGGGGA-TCCAAATGCAAAGAAAGATGGGCAATCAAGCCAAAATGGC-CAGTTCTCGCAG 549
||||| || || |||||||| |||||| ||| ||| |||| || | ||||||||||||
Sbjct 411 CGGGGAATC-AAGTGCAAAGAGAGATGGTCAACCAAACCAAG-TGTCTCAGTTCTCGCAG 468
Query 550 CTT--------G--CTCA--C-CA-AGG-TCCTTATGGGAACTCTCAAGCT-CAGCAGCA 593
|| | |||| | || ||| ||||||||| ||| |||||||| | | | |
Sbjct 469 GTTCCTCAACAGGGCTCATTCTCACAGGGTCCTTATGGAAACCCTCAAGCTTC-G-A--A 524
Query 594 TATGATGGTTCCAATGCCGGGAACAGACTAGTA 626
||||||||||| ||||||||| ||||| |||||
Sbjct 525 TATGATGGTTCAAATGCCGGGCACAGAGTAGTA 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5