BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37070.1
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901573 jgi|Araly1|901573|Al_scaffold_0004_2223 1297 0.0
> Ahg901573 jgi|Araly1|901573|Al_scaffold_0004_2223
Length=1299
Score = 1297 bits (702), Expect = 0.0
Identities = 874/954 (92%), Gaps = 23/954 (2%)
Strand=Plus/Plus
Query 331 ATGATGGGGAGGAAAAGTTTACCAGCGGTTCAAGAGGATTTGCATAGATCAACAGAGTCT 390
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGATGGGGAGGAAAAGTTTACCAACGGTTCAAGAGGATTTGCTTAGATCAACAGAGTCT 60
Query 391 ATGTCTACATTGAAAAGTGACTGCACTGTGGAGACTGGTCAGGAATTTTTTATGTGTGAT 450
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 61 ATATCTACATTGAAAAGTGACTGCACTGTGGAGACTGGTCAGGAATTTGTTATGTTTGAT 120
Query 451 GCTGCAACACCTGACAAGCGTAAGGACTTGGGATCAACAGAGGCAGTACCTAGCCCAACT 510
|||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||
Sbjct 121 GCTGCAACACCTGACAAGAGTAAGGACTTGGGAGCAACAGAGGCAGTACCTAGTCCAACT 180
Query 511 ACAAGTACACTAGACGACCCTAGCTCTGAGGAAAAGATGAAACCCAATCCTATTCGTAAA 570
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 181 ACAAGTACACTAGACGACCCTGGCTCTGAGGAAAATATGAAACCCAATCCTATTCGTAAA 240
Query 571 AGGCCAGGTATTAGATCACAAGGATTAGCGAAGGCGACAAAGCATCCTGTCGCTTCAGAA 630
|||||| ||||||| |||||||||||| || | |||||||||| || ||||||||| ||
Sbjct 241 AGGCCAAGTATTAGGGCACAAGGATTAGGGATGTCGACAAAGCAGCCCGTCGCTTCAAAA 300
Query 631 GAACACAATACATCCATTTCCAGGCCATCCACTGGACTCAACAGGCCATCCAGTGGACTC 690
|||||| | ||| || | |||| | || ||||||||||||| |||||
Sbjct 301 GAACAC-A-ACA--CA--T-----CCAT----T----TC--CAGGCCATCCAGTAGACTC 339
Query 691 AGCAAAACAAAAAGAGCTTCGGTAGATACTAACAAAGCCAAACAAGAAACGAATCCTAAA 750
||||||| | |||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 340 GGCAAAACTATAAGAGCTTTGGTAGATACTAACAAAGCCATACAAGAAACTAATCCTAAT 399
Query 751 TCATCTGGGGGTAAAGAGCCTTTGGCTTCCAGAGTTCCAATTTCAAGAAGACCTCGACCC 810
| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 400 TTATCTGGAGGTAAAGAGCCTTTGGCTTCCAGAGTTCCAATTTCAAGAAGAACTCGACCT 459
Query 811 ATTGTATCAACACCTGTAGTGCCTTTTAAATCTGCTTTACGTTCTTCAGTCGCCTCCAAG 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATTGTATCAACACCTGTAGTGCCTTTTAAATCTGCTTTACGTTCTTCAGTCGCCTCCAAG 519
Query 871 AATGAATTAACATCTTCTTGCTCTTCCATTGAGAGCTGTCTCAGTGTTTCGTCAACCGCT 930
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 520 AATGAATTAACATCTTCTTGCTCTTCTATTGAGAGCTGTCTCAGTGTTTCGTCAAACGCT 579
Query 931 TCTAACAAGCCTTCTATACATTCAGTAAAGCAGAAGAAAGATCAGAGTTTAAGAATAGCT 990
||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 580 TCTCACAAGCCTTCTTTAGATTCAGTAAAGCGGAAGAAAGATCAGAGTTTAAGAATAGCT 639
Query 991 TCCCATTCTTTGGCAAATAGACCAAAATCCAGCGCTGGATCTAGAAATATAGACCAGCTT 1050
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 640 TCCCATTCTTTGGCAAATAGACCAACATCCAGCGCTGGATCTAGAAATATAAACCAGCCT 699
Query 1051 AAAGTTCCACCCGTCTCAGCCGGTAGGACATACAAGTTCAATGTATCACGTCTTAGTTCT 1110
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 700 AAAGTTCCACCCCTCTCAGCCGGTAGGAAATACAAGTTCAATGTATCACGTCTTAGTTCT 759
Query 1111 AGTGTTGACTGGTCATC-GGAATCACCGCGAGCTTTTACTCCTAATAAAATGGCTAAAGG 1169
|| |||||||||||||| ||| |||||||| |||| ||| |||||||||||||||||| |
Sbjct 760 AGCGTTGACTGGTCATCAGGA-TCACCGCGGGCTTCTACACCTAATAAAATGGCTAAAAG 818
Query 1170 TAACAAGAAAAGTGTCCATGGTGATAACGGTCCTCCAACTGATTATACAACACAGACTTT 1229
|| ||||||||||||||||||||||| ||||||| |||||||| |||||| ||| |||||
Sbjct 819 TACCAAGAAAAGTGTCCATGGTGATAGCGGTCCTACAACTGATGATACAAAACAAACTTT 878
Query 1230 GAAACCTCTGAACAATTCTAAAGATGTATCTGTTGTCCAAGATGACCCAAAGCC 1283
|| |||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 879 GAGACCTTTGAACAATTCTAAAGATTTATCTGTTGTCCAAGATGACCCTAAGCC 932
Score = 435 bits (235), Expect = 7e-121
Identities = 294/321 (92%), Gaps = 10/321 (3%)
Strand=Plus/Plus
Query 1281 GCCTTCTGCTTCCATGATGAAACCAACGGGACTCCGTGTGCCATCGCCAAAAGTTGGCTA 1340
|||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 981 GCCTTCTGCTACCATGATGAAACCAACGGGACTCCGTGTGCCATCACCAAAAATCGGCTA 1040
Query 1341 CTTTGACGGAGCGAGGGGCAGCGTTGCACGAACACCCACGGGATCCTGTACTGGTCCGGT 1400
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1041 CTTTGACGGAGCGAGGAGCAGTGTTGCACGAACACCCACGGGATCGTGTACTGGTCCGGT 1100
Query 1401 AAGTGGCTTGTCAAAACATGGAG-CTTGTAGTCCCGA-TGAATTTACTCCAAGTAG---- 1454
|||||||||| |||||||||||| ||| ||||||| | |||||| ||| |||||||
Sbjct 1101 AAGTGGCTTGGCAAAACATGGAGCCTT-TAGTCCC-ATTGAATTAACTGCAAGTAGAACC 1158
Query 1455 AA--CTGCAAAGTCCCAACCCACAATGTCTAAAGCAGCGGTTCGTCCAGTTTCAAGGAGT 1512
|| ||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||
Sbjct 1159 AAGTCTGCAAAGTCCCAACCCTCAATGTCTAAAGCAAAGGTCCGTCCTGTTTCAAGGAGT 1218
Query 1513 TCAAGGCTGATTGTCTCGGCTTCACCAAAGCTTACCAACAAAAGGTATTCAAAAGTCAGT 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TCAAGGCTGATTGTCTCGGCTTCACCAAAGCTTACCAACAAAAGGTATTCAAAAGTCAGT 1278
Query 1573 GCAGAGGAACAACTTGGATAA 1593
|||||||||||||| | ||||
Sbjct 1279 GCAGAGGAACAACTCGAATAA 1299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5