BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37090.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934357 jgi|Araly1|934357|scaffold_402345.1 1711 0.0
> Ahg934357 jgi|Araly1|934357|scaffold_402345.1
Length=1100
Score = 1711 bits (926), Expect = 0.0
Identities = 1044/1102 (95%), Gaps = 4/1102 (0%)
Strand=Plus/Plus
Query 13 CTTCTTCCTTGAAGAGAGGGTTATGGGATCTCTAGAGAGATCAAAGAAGAAAGCTCAAGT 72
|||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCCTTAAACAGAAGGTTATGGGATCTCTAGAGAGATCAAAGAAGAAAGCTCAAGT 60
Query 73 ATGGAAGAAAGCTGTGATCC-ATTTCTCTCTATGTTTTGTAATGGGTTTCTTCACTGGCT 131
|||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct 61 ATGGAAGAAAGCTGTGATCCAATTT-TCTCTTTGTTTTGTAATGGGTTTCTTCACTGGCT 119
Query 132 TCGCTCCTGCTGGTAAGGCCTCATTTTTCTCTAATTTCGAAACGACTTCTTATACTTCTA 191
| |||||||||||||||||||||||||||||||||| |||||| || | ||||||||||
Sbjct 120 TTGCTCCTGCTGGTAAGGCCTCATTTTTCTCTAATTCCGAAACCACCCCCTATACTTCTA 179
Query 192 CAAAATCTCCGATTCCTCCCCAACCTTTTGAAAACGCTACATACACACAACATTCCCTCC 251
||||||||| ||| |||||||||||||||||||| |||| ||||||| ||||||||||
Sbjct 180 CAAAATCTCAAATTTCTCCCCAACCTTTTGAAAACTCTACCTACACACCCCATTCCCTCC 239
Query 252 TCAATAGAACCTTGATCAATTCCCAAAGCCAAGCTCCAGCTCCCGCAGAGTCGCGAGAAG 311
||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 240 TCAATAGAACCTTGACCAATTCCCAAGGCCAAGCCCCAGCTCCCGCAGAGTGGCGAGAAG 299
Query 312 CTGAAGGAGAAACAAGATCTCTCTCCGAGAAAGAAGATGAGAATCAAGTAAAAGTGACAC 371
| |||| |||||| |||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 300 CCGAAGCAGAAACCAGATCTCTCTCCGAGACAGAAGATGAGAACCAAGTTAAAGTGACAC 359
Query 372 CAAGAGGACTAGTGATTGTTGTAACTCCAATAATAACTAAAGATCGCTACAAAAACGTTC 431
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 CAAGAGGACTAGTGATTGTTGTAACTCCAATAATAACGAAAGATCGCTACAAAAATGTTC 419
Query 432 TTCTTAGGAGAATGGCCAATACCTTGAGGCTAGTTCCACCTCCCTTATTGTGGATAGTCG 491
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 420 TTCTTAGGAGAATGGCCAATACATTGAGGCTAGTTCCACCTCCATTATTGTGGATAGTCG 479
Query 492 TGGAAAAACACTCGGATGGC-GAAGAAAAATCTTCGTCTACAATGTTAAGAAAGACCGGT 550
|||| |||||||| ||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 480 TGGAGAAACACTCAGAT-GCTGAAGAAAAATCTTCATCTACAATGTTAAGAAAGACCGGT 538
Query 551 ATCATGTATAGACGTATAGTCTTCAAGGAAGATTTCACAAGCTTAGAATCAGAGCTTGAT 610
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 539 ATCATGTATAGACGTATAGTCTTCAAGGAGGATTTCACAAGCTTGGAATCAGAGCTTGAT 598
Query 611 CATCAAAGGAATCTAGCTTTGAGGCACATTGAACATCACAAATTAAGCGGAATAGTTCAT 670
|||||||||||| |||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 599 CATCAAAGGAATTTAGCGTTAAGACACATTGAACATCACAAATTAAGCGGGATAGTTCAT 658
Query 671 TTTGCGGGACTAAACAACATATATGATCTTGATTTTTTCGTCAAGATCAGAGATATCGAG 730
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 TTCGCGGGACTAAACAACATATATGATCTTGATTTTTTCGACAAGATCAGAGATATCGAG 718
Query 731 GTATTTGGTACTTGGCCAATGGCATTGTTATCGGCTAATAGGAAACGAGTGGTAGTAGAA 790
||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 719 GTATTCGGTACTTGGCCAATGGCATTGCTATCGGCTAATAGGAAACGAGTGATAGTAGAG 778
Query 791 GGGCCTGTTTGTGAATCTTCACAAGTATTGGGGTGGCATTTGAGAAAAATTAATAACGAG 850
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGGCCGGTTTGTGAATCTTCACAAGTATTGGGGTGGCATTTGAGAAAAATTAATAACGAG 838
Query 851 ACAGAGACAAAGCCTCCGATTCATATATCAAGCTTCGCTTTCAATAGTTCCATACTTTGG 910
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 ACAGAGACAAAGCCTCCGATTCATATATCAAGTTTCGCTTTCAATAGTTCCATACTTTGG 898
Query 911 GACCCTGAGAGATGGGGTCGTCCTTCTTCTGTTGAAGGCACCAAACAGGATTCGATAAAA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GACCCTGAGAGATGGGGTCGTCCTTCTTCTGTTGAAGGCACCAAACAGGATTCGATAAAA 958
Query 971 TATGTGAAGCAAGTAGTTTTGGAGGACGATACAAAGTTGAAGGGACTTCCGGCACAAGAT 1030
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TATGTGAAGCAAGTAGTTTTGGAGGACGATACAAAGTTGAAGGGACTTCCGGCACAAGAC 1018
Query 1031 TGTTCCAAGATTATGCTTTGGCGTCTCAAATTTCCCACAAGAACACGTTTAAGCACCTGA 1090
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1019 TGTTCCAAGATTATGCTTTGGCGTCTCAATTTTCCCACAAGAACACGTTTAAGCCCCTGA 1078
Query 1091 TTTGCTTTATTTCATTCTAATC 1112
| |||||||||| |||||||||
Sbjct 1079 TATGCTTTATTTTATTCTAATC 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5