BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37100.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482699 jgi|Araly1|482699|fgenesh2_kg.4__1759__AT2G37100.1 1256 0.0
> Ahg482699 jgi|Araly1|482699|fgenesh2_kg.4__1759__AT2G37100.1
Length=996
Score = 1256 bits (680), Expect = 0.0
Identities = 921/1027 (90%), Gaps = 58/1027 (6%)
Strand=Plus/Plus
Query 1 AAGAGTGAGAGTTTCAGTACCAAAAAATCCTTAGACACAAAAAGAGATGAGGTTTTCTTC 60
||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 AAGAGTGGGAGTTTCAGTACCAAATAATCCTT--ACACAAAAAGAGATGAGGTTTTCTTC 58
Query 61 ATCTAGACCCGTTTCGAGTCCGGGTCGAACCGAAAACCCGCCTCTACTCATGCGGTTCTT 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ATCAAGACCCGTTTCGAGTCCGGGTCGAACCGAAAACCCGCCTCTACTCATGCGGTTCTT 118
Query 121 GCGGACCAAAAGCAGAAGCAGAAGCCGTTCTCGTTCAAGAAGACCTATCTTTTTCCGTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 GCGGACCAAAAGCAGAAGCAGAAGCCGTTCTCGTTCAAGAAGACCTATCTTCTTCCGTCG 178
Query 181 GAAAAATGCTTCTGCTGCGGCGGAG--AC-ACAAGAACCAACTTCACCTAAAGTCACTTG 237
|||||| ||| | |||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 179 GAAAAACGCTGCGGCTGCGGCGGAGACACAACAAGAACCAACTTCACCTAAAGTAACTTG 238
Query 238 CATGGGTCAAGTAAGGATAAACCGATCAAAGAAACCCAAACCCGAAACTGCTCGAGTCTC 297
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 239 CATGGGTCAAGTAAGGATAAACCGATCAAAGAAACCCAAACCCGGAAGTGCTCGAGTCTC 298
Query 298 CGGAGGTGCAACAGAAAGGCGACGCCAGAGCCGTCGGTGC-----GG-GTGGGTCAAGAA 351
|||||||||||| ||||| || |||| ||| ||||||||| || ||||||||||||
Sbjct 299 CGGAGGTGCAACGGAAAGCCGTCGCCGGAGTCGTCGGTGCGGGTGGGTGTGGGTCAAGAA 358
Query 352 CGCTTTTCCCTGTCATTCTTTCACCGGAATAATCAAACCTACTTGCTTTAGCCCTGTGTG 411
||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 359 CGCTTTTTCCTGTCATTCTTTCACCGGAAAAATCAAACCGGCTTGCTTTAGCCCTGTGTG 418
Query 412 GCGTAAATGGAAATCATTTTCTCATGCTAGTTTCTCGAAAAAATCAGAGAAGAGATCAAG 471
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 419 GCGTAAATGGAAATCATTTTCTCATGCTAGTTTCTCGAGAAAGTCAGAGAAGAGATCAAG 478
Query 472 TTCGTCTAGAAGTGAACCTATCTTTGGCCGCTCCACGGTGGAGCCagaggaaccagaaga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCGTCTAGAAGTGAACCTATCTTTGGCCGCTCCACGGTGGAGCCAGAGGAACCAGAAGA 538
Query 532 gactcgaaaagaagaaaaccaagaagaagaagCAAGTTCATGTAAATCATTCACAGCTAC 591
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 GACTCGACAAGAAGAAAACCAAGAAGAAGAAGCAAGTTCATGTAAATCTTTCACAGCTAC 598
Query 592 ACCACCGAGAAACGCTTTTTTACTAACTCGATGTAGATCTGCACCATATAGATCTCCTTC 651
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 599 ACCACCGAGAAACGCTTTTTTACTAACTCGATGCAGATCTGCACCGTATAGATCTCCTTC 658
Query 652 ATCAGCTAATAGCTTATTTGAAGATCAAGAAGAGAC-AAATAAAGCTCCTTTCCAACGAC 710
|| ||||||||| || |||||||||||||||||| | || |||||||||||| |||||
Sbjct 659 ATTAGCTAATAGTTTCTTTGAAGATCAAGAAGAG-CTGAAGGAAGCTCCTTTCCGACGAC 717
Query 711 ACGCTTCGTCGGAAAATGTATCAGTTTCGGAAGAACCGAAGACAAGCGTTACAGAAACAA 770
||||||||||||||||||| |||||||| | ||| | | || || | || |
Sbjct 718 ACGCTTCGTCGGAAAATGTTTCAGTTTC-G--GAA--G-A-AC---CG--A-AG-----A 759
Query 771 CAGAGAGATTAGAGGATTCAAGAAGAGAATCAGCAGCGAGTGAAGAACCAAAACGAAGCG 830
| ||| | ||| | || || || || |||| |||||||||||||||||||||||||
Sbjct 760 C-GAGCG-TTACA-GA---AACAACAG---CAGCGGCGAGTGAAGAACCAAAACGAAGCG 810
Query 831 TTTTGGGATCACCACGACAGTGTCTGATCCTCACGCGCTGTAACTCGGAGCCAGCGAGAC 890
||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 811 TTTTGGGATCACCACGAGAGTGTCTGGTACTCACGCGCTGTAACTCGGAGCCAGCGAGAA 870
Query 891 TCG---------T--TCCC-GAGATGGGTTATCGACAGAACCCAAGGTTGGGATTTACGT 938
||| | |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 871 TCGGAGAGAAACTCGTCCCCGATATGGGTTATCGACAGAACCCAAGGTTGGGATTTACGT 930
Query 939 GATGCGTTTACAtttt-ttttctc----tttcttttgtattttttCGAGAAATTTACATT 993
|||| ||||||||||| |||| ||| ||| ||||||||||||||||||||||||
Sbjct 931 GATGGGTTTACATTTTCTTTTAAAAAAATTTGTTT-GTATTTTTTCGAGAAATTTACATT 989
Query 994 GAAACGA 1000
|||||||
Sbjct 990 GAAACGA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5