BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37120.1
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934360 jgi|Araly1|934360|scaffold_402348.1 394 4e-109
> Ahg934360 jgi|Araly1|934360|scaffold_402348.1
Length=277
Score = 394 bits (213), Expect = 4e-109
Identities = 251/269 (93%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 124 TCTCAGATTTCCGGATAC-TAGCCATGAGCAGTGATGGTTCCGCCGGAAAGGCGGTTGTT 182
|||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1 TCTCAGATTTCCGGAT-CGTAGCCATGAGCAGTGAAGGTTCCGCCGGAAAGGCGGCTGTT 59
Query 183 GAAGCCAAAGGATTGAACCCTGGATTGATAGTGCTGCTTGTTATTGGAGGTCTGCTTGTG 242
||||| |||||||||||||| || ||||||||| |||||||| ||||||| |||||||||
Sbjct 60 GAAGCTAAAGGATTGAACCCGGGGTTGATAGTGTTGCTTGTTGTTGGAGGCCTGCTTGTG 119
Query 243 ACATTTC-TCATAGCCAATTACGTTATGTACATGTATGCTCAGAAGAATCTACCTCCAAG 301
||| ||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 120 ACA-TTCTTGATAGCCAATTACGTGATGTACATGTATGCTCAGAAGAATCTACCCCCAAA 178
Query 302 GAAGAAGAAGCCTCTTTCCAAAAAGAAGCTCAAGCGTGAGAAGCTGAAGCAGGGAGTCCC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAAGAAGAAGCCTCTTTCCAAAAAGAAGCTCAAGCGTGAGAAGCTGAAGCAGGGAGTCCC 238
Query 362 TGTGCCCGGCGAATAGATTCCAGCTTCTT 390
|||||||||||||||||| |||||||||
Sbjct 239 CGTGCCCGGCGAATAGATTTCAGCTTCTT 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21863152497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5