BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37130.1
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345443 jgi|Araly1|345443|fgenesh1_pg.C_scaffold_4001785 1585 0.0
> Ahg345443 jgi|Araly1|345443|fgenesh1_pg.C_scaffold_4001785
Length=984
Score = 1585 bits (858), Expect = 0.0
Identities = 942/984 (96%), Gaps = 0/984 (0%)
Strand=Plus/Plus
Query 74 ATGGCCAATGCGAAGCCCTTTTGTCTCCTCGGCTTCTTTTGTCTGTTATTACAGTTATTC 133
|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCCAATGCGAAGCACTTTTGTCTCTTCGGGGTCTTTTGTCTGTTATTACAGTTATTC 60
Query 134 TCCATCTTCCATATCGGAAATGGGGAATTGGAGATGAACTATTACAAAGAGAGTTGTCCA 193
|||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 61 TCCATCTTCCGTATCGGAAATGGGGAATTGGAGATGAACTATTACAGAGAAAGTTGTCCA 120
Query 194 AAAGCGGAAGAGATAATAAGACAACAAGTGGAGACGCTTTACTACAAACACGGTAACACA 253
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AAAGCGGAAGAGATTATAAGACAACAAGTGGAGACGCTTTACTACAAACACGGCAACACA 180
Query 254 GCCGTATCTTGGCTCCGTAATCTCTTCCATGACTGTGTCGTCAAGTCGTGTGATGCGTCG 313
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GCCGTATCTTGGCTCCGTAATCTCTTCCATGACTGCGTCGTCAAGTCGTGTGATGCGTCG 240
Query 314 CTGCTGCTAGAGACAGCGAGAGGTGTGGAATCTGAGCAGAAATCGAAGAGGAGTTTCGGT 373
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCTTCTAGAGACAGCGAGAGGTGTGGAATCTGAGCAGAAATCGAAGAGGAGTTTCGGT 300
Query 374 ATGAGAAACTTTAAGTACGTTAAGATTATCAAAGACGCACTCGAGAAAGAGTGTCCTTCC 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGAGAAACTTTAAGTACGTTAAGATTATCAAAGACGCACTCGAGAAAGAGTGTCCTTCA 360
Query 434 ACAGTCTCTTGTGCTGATATTGTCGCTCTTTCTGCGAGAGACGGTATTGTCATGTTGAAA 493
||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||| |||||
Sbjct 361 ACAGTTTCTTGCGCTGATATAGTCGCTCTCTCTGCTAGAGACGGTATTGTCATGCTGAAA 420
Query 494 GGGCCAAAGATAGAGATGATAAAGACAGGAAGGAGAGATAGTAGAGGGAGCTACTTGGGA 553
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 421 GGGCCAAAGATAGAGATGATAAAGACAGGAAGGAGAGATAGCAGAGGGAGCTATTTGGGA 480
Query 554 GATGTTGAGACTCTAATCCCTAACCACAATGACTCTCTCTCATCTGTTATCTCCACCTTT 613
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 481 GATGTTGAGACTCTAATCCCTAACCACAATGACTCTCTTTCCTCTGTTATATCCACCTTT 540
Query 614 AACTCCATTGGCATCGATGTCGAAGCCACCGTCGCTCTCTTAGGTGCTCACTCAGTGGGT 673
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACTCCATTGGTATCGATGTCGAAGCCACCGTCGCTCTCTTAGGTGCTCACTCAGTGGGT 600
Query 674 AGGGTCCACTGCGTTAACCTAGTGCACCGGCTATACCCAACGATTGACCCTACTCTCGAC 733
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AGGGTCCACTGCGTTAACCTAGTGCACCGGCTATACCCAACGATTGACCCGACTCTCGAC 660
Query 734 CCAAGTTACGCCCTTTACTTaaaaaaaCGTTGCCCAAGTCCAACACCGGACCCGAACGCC 793
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 CAAAGTTATGCCCTTTACTTAAAAAATCGTTGCCCAAGTCCAACACCGGACCCGAACGCC 720
Query 794 GTCTTGTACTCCCGTAACGATCGTGAGACTCCGATGGTTGTGGACAACATGTATTATAAG 853
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GTCTTGTACTCCCGCAACGATCGTGAGACTCCGATGGTTGTGGACAACATGTATTACAAG 780
Query 854 AACATCATGGCCCATAAGGGGCTTCTTGTCATTGATGATGAGCTAGCCACCGATCCCAGG 913
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 AATATCATGGCACATAAGGGGCTTCTTGTCATTGATGATGAGCTAGCCACCGATCCGAGG 840
Query 914 ACCGCACCGTTTGTGGCCAAGATGGCTGCGGACAATAATTACTTCCATGAGCAGTTCTCA 973
|||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 841 ACCGCACCGTTTGTCGCCAAGATGGCTACGGACAATGGTTACTTCCATGAGCAGTTCTCA 900
Query 974 CGTGGCGTCAGGCTCTTGTCCGAGACCAACCCGCTCACGGGAGACCAAGGGGAGATCAGG 1033
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 901 CGTGGCGTCAGACTCTTGTCCGAGACCAACCCACTCACTGGAGACCAAGGGGAGATCAGG 960
Query 1034 AAGGATTGTCGTTATGTGAACTAA 1057
|||||||| || ||||||||||||
Sbjct 961 AAGGATTGCCGATATGTGAACTAA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50932217112
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5