BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37150.3
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482704 jgi|Araly1|482704|fgenesh2_kg.4__1764__AT2G37150.1 2617 0.0
> Ahg482704 jgi|Araly1|482704|fgenesh2_kg.4__1764__AT2G37150.1
Length=1926
Score = 2617 bits (1417), Expect = 0.0
Identities = 1677/1800 (93%), Gaps = 28/1800 (2%)
Strand=Plus/Plus
Query 154 GGTTTAATGGGGCACAGACATTTTCTTGGTTCATCCCAGTTTTTTGATGATGAACATGAT 213
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 142 GGTTTAATGGGGCACCGACATTTTCTTGGTTCGTCCCAATTTTTTGATGATGAACATGAT 201
Query 214 CAAGGCTGGAATCATACACACCCAGAACATCCATATTCGAGTCAAGCAACATCTGGGACC 273
|||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||
Sbjct 202 CAAGGCTGGAATCATACACATCCAGAACATCCATATACGAGTCTAGCAAGATCTGGGACC 261
Query 274 AGTGAGAACAGATCACATGTTTATCCAGCAGAAAACATGTTGAATGAAGGAATGCCAGTG 333
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 262 AGTGAGAACAGATCGCATGTATATCCAGCTGAAAACATGTTGAATGAAGGAATGCCAGTG 321
Query 334 TCTTCTCATTGGAACTCTTCTCCAGGACCAAATGCTTATACTGACTCAGGTCATAGTGTG 393
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 322 TCTTCTCATTGGAACTCTTCTCCAGGACCAAATGCCTATACTGCCTCAGGTCATAGTGTG 381
Query 394 GAGAGACCACACTACAATCCGGGGGTTTCGGGGCCGTCCCATGATCCTTCCGTGAATTCA 453
||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct 382 GAGAGACCACACTACAATCCGGGGGCTTCGGGGCCATCCCATGATCCTTTCGTGAATTCA 441
Query 454 ACAGTTCCAACTTTCTCTGCTCCACATGAGAATTATGTGACATTTGCATCTTCTTC-AAG 512
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||
Sbjct 442 ACAGTTCCAACTTTCTCTGCTCCAAATGAGGATTATGTGACATTTGCATCTTCGTCGAA- 500
Query 513 CTACAACAGCCAGACATGGTCAAATGCTAGTTATGTTGATCATCAATCTATGGAAAGTGT 572
|| |||||||||| | ||| | |||||||||||||||| ||||||||||||||| |||
Sbjct 501 CTGCAACAGCCAGGCCTGGACCAATGCTAGTTATGTTG---ATCAATCTATGGAAAATGT 557
Query 573 GAGAGGAGCACAAAAGAGAAAACGACCATGTCCTTCTTCCATCTATGAAATGGGTAGTTC 632
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 558 GAGAGGAGCACAAAAGCGAAAACGCCCTTGTCCTTCTTCCATCTATGAAATGGGTAGTTC 617
Query 633 AAGCCAATATCAC-GGTGACAGAACTCCTGCAGACACTCATTTCCCCTCGGAATTGCACT 691
||||||||||||| || |||| ||||||| ||||||| ||||||||||||||||| |||
Sbjct 618 AAGCCAATATCACAGG-GACAAAACTCCTACAGACACCCATTTCCCCTCGGAATTTCACC 676
Query 692 TGGGAAAATCAATAACGCATGATCATGACCCTCATTACATGCCATGGCTTATGAACCCAA 751
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 677 TAGGAAAATCAATAACGCATGATCATGATCCTCATTACATGCCATGGCTTATGAACCCAA 736
Query 752 CTTACAGAAGTAATAATCTCTCGATCAGGGGAGAGAGCTCTTCAAGGAATGTCCGGAGTC 811
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 737 CTTACAGTAGTAATAATCTCTCGATCAGGGGAGAGAGTTCTTCAAGGAATGTCCGTAGTC 796
Query 812 GTCCTACACTTGATTCAGAGACCAGCTTAGGTAGAAATAATTTGCCAAGAAGCTTGAGCC 871
|| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 797 GTTCTACACTTGATTTAGAAACCAGCTTAGGAAGAAATAATTTGCCAAGAAGCTTGAGCC 856
Query 872 TTGATTCTCATTCTACACACCACCACAGTGTTGATCATTATGGCTCAGGTCAATTTCCTG 931
||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 857 TTGATTCCCATTCTACACACCGCCACAGTGTTGATCATTCTGGCTCAGGTCAATTTCCTG 916
Query 932 GTCAGACATCTCACGGAAATAAAGACTGGAACTGTGCTAGATTGTCCCCAGTTCTTAGAG 991
||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 917 GTCAGACCTCTCACGGAAATAAAGACTGGAACTGTGCTAGATTGTCCTCAGTTCCTAGAG 976
Query 992 ATATAAATGGCTTTAGTCCAGAGACAAATAATTTCCTTCCTGCAAGAAGTGTTGTCAACA 1051
||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 977 ATACAAATGGCTTTAGTCCAGAGACAAATAATTTTCTTCCTGCGAGAAGTGTTGTCAACA 1036
Query 1052 GCTTATCTGTTAATACTTCCGGCTATCATCACCATGAGCTTACCGGAAACAGAAACCCTA 1111
||||||||||| ||||||||||| | ||||||||| ||| |||||||||||||||| ||
Sbjct 1037 GCTTATCTGTTGATACTTCCGGC--T-ATCACCATGGGCTCACCGGAAACAGAAACCATA 1093
Query 1112 CAGTTTCCCACGGGGTTCCTGGAACTTCAACACTATCTACAAGCAGCAGCCGC-T-TCTC 1169
||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1094 CAGTTTCCCACGGTTTTCCTGGAACTTCAACACAATCTACAAGCAGCAGCCGCTTCTCTC 1153
Query 1170 -TCATAGGTCAACATCCACCTATAGATCTTCTTCACACGGTTCGCGATCGGGACATGTAG 1228
||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1154 ATCATAGGTCAACACCCACCTATAGATCTTCTTCACAGGGTTCGCGATTGGGACATGTAG 1213
Query 1229 CATCTTCTTCTGGAGACAGGTCTCATTTGGTCACTGAGACTTATCCGTCTAGGCATTTAA 1288
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1214 CATCTTCTTCTGGAGATAGGTCTCATTTGGTCACTGAGACTTATCCTTCTAGGCATCTAA 1273
Query 1289 GGCCACCACCACACATTTCATGGCGTAGCGGTGATCGGCCAGGGAGACGCAGAAGTTCCT 1348
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1274 GGCCACCACCACACATTTCATGGCGTAGCGGTGATCGCCCAGGGAGACGCAGGAGTTCCT 1333
Query 1349 ATGAGAGGTTTCAGCCTCCTTTCGATGAAGTTGCTCTCCACGAACGGTTTTCATCTGAGG 1408
|||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 1334 ATGAGAGGTTTCAGCCTCCTTTCGATGAAGTTTCCCTCCATGAACGGTTTTCATCTGAGG 1393
Query 1409 AATTCATGGTTGAAGATCGCCAACCACAATACTACGGATCCAGAAACATGCTTGATCACC 1468
||||||||| | ||||||||||||||| ||||||| ||| |||||||||||||||||||
Sbjct 1394 GATTCATGGTCGTAGATCGCCAACCACACTACTACGAATCTAGAAACATGCTTGATCACC 1453
Query 1469 ACAGAGACATGAGGCTTGACATCGATAACATGAGCTATGAGGAACTCCTTGATCTTGGAG 1528
| |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 1454 ATAGAGACATGAGGCTCGACATCGATAACATGAGCTACGAGGAACTCCTTGCTCTTGGGG 1513
Query 1529 AAAGGATTGGGAGTGTCAACACTGGTCTATCCGACAGCGCAATCTCCAGTTGCTTGTTAG 1588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AAAGGATTGGGAGTGTCAACACTGGTCTATCCGACAGCGCAATCTCCAGTTGCTTGTTAG 1573
Query 1589 CAACAATGTATTATCCATCATATCAAACAGAGGAGCAAAGAAAATGTGCAATCTGCCTGG 1648
|||||| ||||||||||| |||||||||||||| ||||||||||| || || |||||||
Sbjct 1574 CAACAACATATTATCCATCGTATCAAACAGAGGACCAAAGAAAATGCGCTATTTGCCTGG 1633
Query 1649 AGGAGTACAAGGAAAAAGAAGAGTTAGGGGAAGTTAAGGGGTGTGGTCATGACTACCATG 1708
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1634 AGGAATACAAGGAAAAAGAAGAGTTAGGGGAAGTTAAAGGGTGTGGTCATGACTACCATG 1693
Query 1709 GGAGGTGCATCAAGAAATGGTTGTCTATGAAGAACTCTTGCCCTATTTGCAAATCCCCTG 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 GGAGGTGCATCAAGAAATGGTTGTCTATGAAGAACTCTTGCCCTATTTGCAAATCCCCTG 1753
Query 1769 CTTTACCTGATGCTTCTAAGAACTCATCATAAATTATAGGTTATCTTTTATGTGTG--CA 1826
||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||| ||
Sbjct 1754 CTTTACCTGATGCTTCTAAGAACTCATCATAAAATATAGAT-ATCTTTTTTGTGTGTGCA 1812
Query 1827 TGTTATATT-----CATTTGTCTTTCGAAAGGAAGAAAAATATGTGACAGAATATAACAT 1881
||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 1813 TGTTATATTATATTCATTTGTCTTTCTAAAGGAA-AAAAATATGTGATAGAATATAACAT 1871
Query 1882 -TAAGTTTTCTTAGTGATTAATAGTTGTAAATAGAAGAAAGTCCAGGATCTTTCTCAAGG 1940
|| ||||||||||| | | |||||||||||||||| ||||||||||||||||| ||||
Sbjct 1872 ATA-GTTTTCTTAGT-A--A-TAGTTGTAAATAGAAGGAAGTCCAGGATCTTTCTTAAGG 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5