BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37160.2
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482705 jgi|Araly1|482705|fgenesh2_kg.4__1765__AT2G37160.1 2684 0.0
Ahg938238 jgi|Araly1|938238|scaffold_502429.1 1382 0.0
> Ahg482705 jgi|Araly1|482705|fgenesh2_kg.4__1765__AT2G37160.1
Length=2101
Score = 2684 bits (1453), Expect = 0.0
Identities = 1629/1712 (95%), Gaps = 20/1712 (1%)
Strand=Plus/Plus
Query 486 TCAGGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGGACCTC 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 297 TCAGGTTACTCTAGCTCACCTTAAGGATAAACCTGCTCCATCGACACCAACTGGTACCTC 356
Query 546 GTCAAGTTCCACAGCTAGTAGCGGTTTCCGGTCAGCAACAGCAAGGTTATTGGGTGGTGG 605
||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 CTCAAGTTACACTGCTAGTAGCGGTTTCCGGTCAGCAACAGCAAGGTTGTTGGGTGGTGG 416
Query 606 GAATGGTAACCGTGCGCTTAGTTTTGTTGGAGGTAATGGAGGGGCTAAAAATGTGGGTGC 665
||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct 417 GAATGGTAACCGTGCGCTTAGTTTTGTTGGAAGTAATGGAGGGACCAAAAATGTGGGTGC 476
Query 666 AAGTTCAAGGATTGGGGCCTCATTCGCTGCTTCTAGTTCTAATACCTCAGCTACTAATAC 725
||||||||| ||||| ||||| ||| ||||||||||||||| |||||| |||||||||||
Sbjct 477 AAGTTCAAGAATTGGTGCCTCCTTCCCTGCTTCTAGTTCTAGTACCTCGGCTACTAATAC 536
Query 726 AAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTGGTGATGCTATTTTTATTAG 785
|||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 537 AAATTTCGATGGGAGAGGAACTTACTTAGTCTTCAATGTGGGTGACGCTATTTTTATTAG 596
Query 786 TGACTTGAACTCGCAGGACAAGGATCCAGTAAAGTCTATACATATCAGCAATTCAAACCC 845
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 TGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATACATATCAGCAATTCGAACCC 656
Query 846 TATGTGCCATGCATTTCATCCAGATGCTAAGGATGGACATGATCTACTTATTGGGCTGAA 905
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TATGTGCCACGCATTTGATCCAGATGCTAAGGATGGACATGATCTACTTATTGGGCTGAA 716
Query 906 CTCTGGGGATGTCTACACCGTATCACTAAGACAGCAGTTGCAGGATGTTGGTAAGAAGCT 965
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 TTCTGGGGATGTCTACACGGTATCACTAAGACAACAGTTGCAGGATGTTGGTAAGAAGCT 776
Query 966 TGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTGTACTAGTAT 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTGTACTAGTAT 836
Query 1026 AGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTA 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 837 CGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATTTGTA 896
Query 1086 CGTATATGAAAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTATAAGGGATCC 1145
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGTATATGAGAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTATAAGGGATCC 956
Query 1146 TACACAGTTTTCAGTTGACAAAGCAAAATATAGCAAGAGTAATCCAGTAGCGAGATGGCA 1205
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 TACACAATTTTCAGTTGATAAAGCAAAATATAGCAAGAGTAATCCAGTAGCAAGATGGCA 1016
Query 1206 TATTGGGCAAGGTGCGATTAATAGCATTGCATTTTCAAATGATGGAGCGTACTTGGCAAC 1265
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1017 TATTGGGCAAGGTGCGATTAATTGCATTGCATTTTCAAATGATGGAGCATACTTGGCAAC 1076
Query 1266 TGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTTTTCAACCCAAAAGCTAGTGTGTGG 1325
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1077 TGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTTCTCAACCCAAAAGCTAGTGTGTGG 1136
Query 1326 TGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGATGGAAAGTACCT 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGATGGAAAGTACCT 1196
Query 1386 TTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGT 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGATCGAAAGGTTGT 1256
Query 1446 GGCATGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGATTCGTATTGGTC 1505
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGCGTGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGATTCGTATTGGTC 1316
Query 1506 GTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCA 1565
|||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1317 GTCACCAAATACAGAGGGGTCTGGTGAGAATGTCATGTATCGGTTTGGTTCCGTTGGTCA 1376
Query 1566 GGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCG 1625
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1377 GGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTTCGGCG 1436
Query 1626 ACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGTCCGCTCACTGGGACAACAT 1685
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1437 ACCTCCAGGAGGATCGCCCACTTACAGCACAGGGAGTCAATCCGCTCACTGGGACAACAT 1496
Query 1686 TGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGATGTCCCAAAGCTCTCACC 1745
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1497 TGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGACGTCCCAAAGCTCTCACC 1556
Query 1746 AGTAGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGATCTTCACCCAAGAATC 1805
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1557 AGTAGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGATCTTCACGCAAGAATC 1616
Query 1806 ATTGATAACAGCTTGCAGAGAAGGCCATTTAAAGATCTGGACACGACCTGACACCCAGCC 1865
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1617 ATTGATAACAGCTTGCAGAGAAGGCCATTTAAAGATCTGGACACGACCTGACACTCAGTC 1676
Query 1866 CAGCAGCAGCTCAGAAGCAACAAATCCAACCACAAGCAAACCCTCGCTGACCAGCAAGGT 1925
|||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1677 TAGCAGC---TCAGAAGCAACAAATCCAACCACAAGCAAACCGTTGCTGACCAGCAAGGT 1733
Query 1926 TGGTGGTTCCAGTTAATTCAGTCACCATTTAAATCATATTGTTTCAGGTCGTGGTTTCGA 1985
||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1734 CGGTAGTTCCAGTTAACTCCGTCACCATTTAAATCATATTGTTTCAGGTCTTGGTTTCGA 1793
Query 1986 AAGGAAACCCTGTGAATATCTCTCCTCGGTACTGAATCTGACTCTATCGATGTGTGGGAG 2045
|||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1794 AAGGAATCCCTCTGAATATCTCTCCTCGGAACTGAATCTGACTCTATTGATGTGTGGGAG 1853
Query 2046 AGAGGCTGAGACATTTCTGGGGATTGATGGAGATGAAAG-GA-GATA-A-A-GA-GA--G 2097
|| | ||||||||||||||||||||| |||||| ||||| || || | | | || || |
Sbjct 1854 AG-G-CTGAGACATTTCTGGGGATTGCTGGAGACGAAAGAGATGAAAGAGACGAAGACAG 1911
Query 2098 TTTTCAGA-TGTAATTAAGA-GAAAACAGATCTTTTGGATTTTAGGGTTTATATCCAACA 2155
||||| || |||||||| || |||||||||| |||||||||| |||||||||||||||||
Sbjct 1912 TTTTC-GAATGTAATTA-GAAGAAAACAGATTTTTTGGATTT-AGGGTTTATATCCAACA 1968
Query 2156 AA-AGCTAACCAAAAACTAATAATTCAAGATT 2186
|| | |||||||||||| |||| |||||||||
Sbjct 1969 AATA-CTAACCAAAAACCAATAGTTCAAGATT 1999
Score = 261 bits (141), Expect = 2e-68
Identities = 180/197 (91%), Gaps = 9/197 (5%)
Strand=Plus/Plus
Query 209 AGTGAGCAAATATGATGAACACTTCGAATGGGATGATCTCTGGGCCTTCTTCTTCGTCAG 268
||||| ||| |||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 116 AGTGACCAATTATGATGAACTCTTCGAATGGCATGATCTCTGCGCCTTCTTCTTCGT--- 172
Query 269 CTTCGGCGGCGAATCCTCAGTCTCCGGGAATCAAAACGTATTTCAAGACGCCTGAAGGAA 328
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 173 C-T-----GCGAATCCTCAGTCTCCGGGAATCAAAACGTATTTCAAGACGCCTGAAGGGA 226
Query 329 AGTACAAGCTCCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTACACTCATGGCA 388
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 227 AGTACAAGCTCCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTATACTCATGGCA 286
Query 389 AAACCGTTACTCAGGTT 405
||||||| |||||||||
Sbjct 287 AAACCGTCACTCAGGTT 303
> Ahg938238 jgi|Araly1|938238|scaffold_502429.1
Length=1717
Score = 1382 bits (748), Expect = 0.0
Identities = 1177/1382 (85%), Gaps = 37/1382 (3%)
Strand=Plus/Plus
Query 486 TCAGGTTACTCTAGCTCACCTTAAGGATAA-ACCTGCTCCATCGACACCAACTGGGACCT 544
|||||| ||||||||||| |||||||| || | ||||||| || || |||||||| || |
Sbjct 200 TCAGGTAACTCTAGCTCAGCTTAAGGA-AAGAGCTGCTCCTTCTACTCCAACTGGTACTT 258
Query 545 CGTCAAGTTCCACAGCTAGTAGC-GGTTTCCGGTCAGCAACAGCAAGGTTATTGGGTGGT 603
|||| ||| || ||||||||| ||||| || ||||||||||| ||||| | || |
Sbjct 259 CGTCGGGTTACAGTGCTAGTAGCGGGTTT-CGCTCAGCAACAGCCAGGTTGCTAGGCACT 317
Query 604 GGGAATGGTAACCGTGCGCTTAGTTTTGTTGGAGGTAATGGAGGGG-CTAAAAATGTGGG 662
|| ||||||| |||||||||||||||||||||||||||||| |||| | |||| |||| |
Sbjct 318 GGAAATGGTAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGGGGC-AAAAGTGTGAG 376
Query 663 TGCAAGTTCAAGGATTGG-GGCCTCATTCGCTGCTTCTAGTTCTAATACCTCAGCT-ACT 720
| |||||||||| ||| | ||| || || ||| |||||| ||||| || ||| | ||
Sbjct 377 TACAAGTTCAAGAATTAGTGGC-TCCTTTGCTCCTTCTAATTCTAGCACATCAA-TGACA 434
Query 721 AATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTG-GTGATGCTATTTT 779
||||| ||||| |||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 435 AATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGT-GAGTGATGCTATTTT 493
Query 780 TAT-TAGTGACTTGAACTCGCAGGACAAGGATCCAGTAAAGTCTATACATATCAGCAATT 838
||| | ||||||||||||| || ||||||||||||||||||||||| ||| |||| ||||
Sbjct 494 TATCT-GTGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATCCATTTCAGTAATT 552
Query 839 CAAACCCTATGTGCCATGCATTTCATCCAGATGCTAAGGATGGACATGATCT-ACTTATT 897
||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||||
Sbjct 553 CAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGA-CTTACTTATT 611
Query 898 GGGCTGAACTCTGGGGATGTCTACACCGTATCACTAAGACAGCAGTTGCAGGATGT-TGG 956
|||||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || |
Sbjct 612 GGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAATTACAGGACGTCTC- 670
Query 957 TAAGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTG 1016
||||||||| ||| |||| | |||||||||||| || |||||||| |||||||| || ||
Sbjct 671 TAAGAAGCTAGTTGGTGCACTGCATTATAACAAGGACGGTTCTGTGAATAACAGTCGTTG 730
Query 1017 TACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGG 1076
||||||||| ||||||||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 731 TACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGG 790
Query 1077 AAATCTGTACGTATATGAAAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTAT 1136
||| ||||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||||||
Sbjct 791 CAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCCACTGAGTCAACATTTCCTGCTAT 850
Query 1137 AAGGGATCCTACACAGTTTTCAGTTGACAAAGCAAAATATAGCAAGAGTAATCCAGTAGC 1196
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 851 AAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCCTGTTGC 910
Query 1197 GAGATGGCATAT-TGGGCAAGGTGC-GATTAATAGCATTGCATTTTCAAATGATGGAGCG 1254
|||||||||||| || |||||| | | |||| ||||||||||| ||||||||||| ||
Sbjct 911 GAGATGGCATATATGT-CAAGGTTCAG-TTAACAGCATTGCATTCTCAAATGATGGGGCA 968
Query 1255 TACTTGGCAACTGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTT-TTCAACCCAAAA 1313
||||||| ||||||||||||||||| |||||||| |||||||| || || |||||| ||
Sbjct 969 CACTTGGCGACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTT-AACCCAGAA 1027
Query 1314 GCTAGTGTGTGGTGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGA 1373
|||||| ||||||| ||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1028 GCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTATGGA 1087
Query 1374 TGGAAAGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGA 1433
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 1088 TGGAAAGTACATTTTGACTGGAGGTGAAGATGACCTAGTTCAAGTGTGGAGTATGGATGA 1147
Query 1434 TCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGA 1493
||| ||||||||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 1148 TCGGAAGGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGCGGAGTAGCGTTTGA 1207
Query 1494 TTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTT-G 1552
||| ||||||||||||||||||||||| ||||| || ||| |||||||||| || ||| |
Sbjct 1208 TTCCTATTGGTCGTCACCAAATTCAGATGGGTCAGGAGAGCATGTCATGTACCG-TTTCG 1266
Query 1553 GTTCTGTTGGTCAGGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTG 1612
| || ||||| ||||||||||||||||| || |||||||| || ||||| ||||| || |
Sbjct 1267 GATCAGTTGGACAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGTAG 1326
Query 1613 TTCCCCT-ACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGTCCGCT 1671
|||| || | ||||| ||||||| || || || |||||||||||||| || | || |||
Sbjct 1327 TTCCACTTA-GGCGAGCTCCAGGTGGGTCTCCAACTTACAGCACAGGAAG-C--TCAGCT 1382
Query 1672 CACTGGGACAACATTGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGATGTC 1731
||||||||||| | | |||||||| |||||||| || || || |||| || |||||
Sbjct 1383 CACTGGGACAATGTCATACCAATGGGAACTCTTCAACCCGCTCCTTGCAAACGAGATGTT 1442
Query 1732 CCAAAGCTCTCACC-AGT-AGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGA 1789
|||||||||||||| | | | | |||||||| |||||||| ||||||||||| || ||||
Sbjct 1443 CCAAAGCTCTCACCGA-TCA-TAGCTCACCGAGTTCACACTGAGCCCCTCTCTGGATTGA 1500
Query 1790 TCTTCACCCAAGAATCATT-GATAACAGCTTGCAGAGAAGGCCATTTAAAGATCTGGACA 1848
| ||||| ||||||||| | | || | |||||| ||||||||||| ||||||||||||||
Sbjct 1501 TGTTCACACAAGAATCAGTCGTTA-CGGCTTGCCGAGAAGGCCATATAAAGATCTGGACA 1559
Query 1849 CG 1850
||
Sbjct 1560 CG 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88369368400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5