BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37180.1
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1 1234 0.0
Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1 891 0.0
Ahg934366 jgi|Araly1|934366|scaffold_402354.1 867 0.0
> Ahg482707 jgi|Araly1|482707|fgenesh2_kg.4__1767__AT2G37170.1
Length=998
Score = 1234 bits (668), Expect = 0.0
Identities = 807/875 (92%), Gaps = 5/875 (1%)
Strand=Plus/Plus
Query 72 ATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGAGAGATTACGAAGATCCTCCG 131
||||| |||||||||||||||||||| || ||||||||||| || ||||| ||||| ||
Sbjct 36 ATGGCGAAAGACGTGGAAGGACCTGAGGGGTTTCAGACGAGGGACTACGAGGATCCGCCA 95
Query 132 CCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGTCTTTATACAGAGCAGTCATC 191
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 96 CCAACACCGTTTTTCGACGCGGAGGAGCTTACGAAGTGGTCTTTATACAGAGCAGTCATC 155
Query 192 GCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCGTTTTAACTGTCATTGGTTAC 251
|| ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 156 GCTGAGTTCGTAGCTACTCTCCTCTTCTTGTACGTCACCGTTTTGACTGTTATCGGTTAC 215
Query 252 AAGATTCAGTCCGACACAAA-AGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGG 310
||||||||||| |||| ||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 216 AAGATTCAGTCTGACA-AAACCGCCGGTGGAGTTGACTGTGGCGGCGTTGGAATCCTCGG 274
Query 311 CATCGCGTGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTC 370
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 275 TATCGCGTGGGCTTTTGGTGGCATGATCTTCATTCTTGTCTACTGCACCGCTGGTATCTC 334
Query 371 AGGTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCT 430
|||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 335 AGGTGGTCACATAAACCCGGCGGTGACGTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCT 394
Query 431 GATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTT 454
Query 491 TGTGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGC 550
||||||||| |||||||||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct 455 TGTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGC 514
Query 551 TGACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGT 610
||||| ||||| || ||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 515 CGACGGTTACAACACTGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGT 574
Query 611 CTACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGT 670
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 575 CTACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGT 634
Query 671 TTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGAT 730
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 635 GTTGGCGCCACTTCCGATTGGGTTTGCTGTGTTTATGGTACATTTGGCAACAATTCCGAT 694
Query 731 CACCGGAACCGGTATCAACCCGGCTAGGAG-TTTCGGAGCCGCCGTAATCTTTAACAAGA 789
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||
Sbjct 695 CACCGGAACCGGTATCAACCCGGCTAGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGA 753
Query 790 GCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 754 GCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCAATAG 813
Query 850 CTGCATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCA 909
||||||||||||||||||| || || ||||| ||||| |||||||| ||||| || ||||
Sbjct 814 CTGCATTTTATCACCAATTTGTCCTCAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCA 873
Query 910 GAAGTGCAGCCAACGTTTAAACTTA-GCCACGAAA 943
|||||||||||||||| | | ||| ||||| |||
Sbjct 874 GAAGTGCAGCCAACGTCTGAGTTTAAGCCACAAAA 908
> Ahg485715 jgi|Araly1|485715|fgenesh2_kg.5__1707__AT3G53420.1
Length=1272
Score = 891 bits (482), Expect = 0.0
Identities = 719/836 (86%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 99 GGATTTCAGACGAGAGATTA-CGAAGATCCTCCGCCAACACCGTTT-TTCGACGCAGAGG 156
||||||||||| ||||| || | | ||||| |||||| | |||||| || || | || ||
Sbjct 238 GGATTTCAGACAAGAGACTATC-ATGATCCGCCGCCAGCTCCGTTTATT-GATGGAGCGG 295
Query 157 AGCTTACCAAGTGGTCTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCT 216
|||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 296 AGCTAAAGAAGTGGTCTTTTTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCT 355
Query 217 TCTTGTACGTCACCGTTTTAACTGTCATTGGTTACAAGATTCAGTCCGACACAAAAGCCG 276
|||| |||||||||||||| |||||||| |||||||||||||||||||| || || ||||
Sbjct 356 TCTTATACGTCACCGTTTTGACTGTCATCGGTTACAAGATTCAGTCCGATACTAAGGCCG 415
Query 277 GTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCATGA 336
| || || ||||||||||| || |||||||| || ||||| ||||| |||||||| ||||
Sbjct 416 GCGGGGTAGACTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGA 475
Query 337 TCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGTGA 396
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 476 TCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGA 535
Query 397 CGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTT-TACATGGTG 455
| ||||| | ||||| || || || || ||| || |||||| | || ||||| |||
Sbjct 536 CATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTGCCTAGGGCCAT-ATTGTACATTGTG 594
Query 456 GCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTGTGAAGGCATTTCAAAGCTCTCAC 515
||||||||||||||||| |||||||||||||| ||||| || || || ||||||||| ||
Sbjct 595 GCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGATTTGTCAAAGCCTTCCAAAGCTCTTAC 654
Query 516 TATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTGACGGCTACAATACAGGCACCGGA 575
|||| |||||| || |||||||||| ||| || || ||||||| ||||| |||||
Sbjct 655 TATGACCGTTACGGCGGTGGAGCCAACTCTCTTGCCGATGGCTACAGCACAGGGACCGGT 714
Query 576 CTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCTACACAGTCTTCTCCGCTACTGAT 635
|| |||||||||||||| || || ||||| ||||||||||| |||||||| || |||||
Sbjct 715 CTAGCGGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGAC 774
Query 636 CCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGGTTT 695
|||||||| | || |||||||||||||||||||| |||||||||||||| || || ||
Sbjct 775 CCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTC 834
Query 696 GCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGTATCAACCCGGCT 755
|||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct 835 GCGGTGTTCATGGTACATTTGGCCACCATTCCCATCACCGGAACCGGAATTAACCCGGCA 894
Query 756 AGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCAAGCCATGGGATGACCACTGGATA 815
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 AGGAGTTTCGGAGCTGCCGTAATCTTCAACAAGAGCAAGCCATGGGATGACCACTGGATA 954
Query 816 TTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTGCATTTTATCACCAATTCGTTCTA 875
|| ||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 955 TTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGTTCTG 1014
Query 876 AGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAAGTGCAGCCAACGTTTAAAC 931
||||| ||||| || ||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 1015 AGGGCTTCAGGTTCTAAGTCTCTCGGATCTTTCAGAAGTGCTGCCAACGTCTAAAC 1070
> Ahg934366 jgi|Araly1|934366|scaffold_402354.1
Length=826
Score = 867 bits (469), Expect = 0.0
Identities = 541/577 (94%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 373 GTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGA 432
|||||||||||||||| |||||||| || || |||||||| || |||||||| |||||||
Sbjct 250 GTGGTCACATAAACCCGGCGGTGACATTGGGATTGTTCTTGGCTCGGAAGGTGTCGCTGA 309
Query 433 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTG 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTG 369
Query 493 TGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTG 552
||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||||| |
Sbjct 370 TGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCG 429
Query 553 ACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCT 612
|||| ||||| |||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 430 ACGGTTACAACACAGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCT 489
Query 613 ACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTT 672
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 490 ACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGT 549
Query 673 TGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCA 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCA 609
Query 733 CCGGAACCGGTATCAACCCGGCTAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCA 792
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 610 CCGGAACCGGTATCAACCCGGCCAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCA 669
Query 793 AGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTG 852
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 670 AGCCATGGGATGACCACTGGATATTCTGGGTAGGACCATTCATTGGAGCTGCGATAGCTG 729
Query 853 CATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAA 912
|||||||||||||||| || || ||||||||||| |||||||| |||||||| |||||||
Sbjct 730 CATTTTATCACCAATTTGTCCTCAGGGCCTCAGGTTCCAAGTCACTCGGTTCCTTCAGAA 789
Query 913 GTGCAGCCAACGTTTAAACTTAGCCACGAAAGaaaaa 949
||||||| ||||||| |||||||||| ||| |||||
Sbjct 790 GTGCAGCAAACGTTTGAACTTAGCCATAAAACAAAAA 826
Score = 315 bits (170), Expect = 6e-85
Identities = 192/203 (95%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 52 AGAAACATCCATTAACACATATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGA 111
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 AGAAACATCCATTAACACATATGGCGAAAGACGTGGAAGGACCTGAGGGATTTCAGACGA 60
Query 112 GAGATTACGAAGATCCTCCGCCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGT 171
| || ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 61 GGGACTACGAAGATCCTCCGCCTACTCCGTTTTTCGACGCGGAGGAGCTTACCAAGTGGT 120
Query 172 CTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCG 231
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 121 CTTTGTACAGAGCAGTCATCGCCGAGTTCGTAGCTACTCTCCTCTTCTTATACGTCACCG 180
Query 232 TTTTAACTGTCATTGGTTACAAG 254
||||||||||||| |||||||||
Sbjct 181 TTTTAACTGTCATCGGTTACAAG 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42773912874
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5