BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37190.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934367 jgi|Araly1|934367|scaffold_402355.1 815 0.0
Ahg938244 jgi|Araly1|938244|scaffold_502435.1 542 2e-153
> Ahg934367 jgi|Araly1|934367|scaffold_402355.1
Length=542
Score = 815 bits (441), Expect = 0.0
Identities = 509/542 (94%), Gaps = 3/542 (1%)
Strand=Plus/Plus
Query 44 AATCCGAGACATC--C-ACAATGCCGCCAAAGTTGGATCCGAGTCAGATCGTTGACGTGT 100
||||||||||| | | ||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1 AATCCGAGACAGCAGCAACAATGCCGCCGAAGTTGGATCCGAGTCAGATCGTTGAGGTCT 60
Query 101 ACGTCCGAGTAACCGGGGGAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAAATCGGTC 160
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGTCCGTGTAACCGGAGGAGAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAAATCGGTC 120
Query 161 CGCTAGGTCTCGCACCAAAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCAAAGGAAT 220
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CGCTAGGTCTTGCACCAAAGAAGATCGGAGAAGATATCGCGAAAGAAACCGCCAAGGAAT 180
Query 221 GGAAAGGATTACGTGTAACCGTCAAGCTCACAGTGCAGAATCGTCAGGCGAAAGTGACGG 280
|||||||||||||||| || |||||||| || |||||||||||||| || ||||| |||
Sbjct 181 GGAAAGGATTACGTGTCACTGTCAAGCTAACGGTGCAGAATCGTCAAGCTAAAGTCTCGG 240
Query 281 TGGTTCCATCAGCAGCAGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGA 340
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGTTCCATCAGCAGCTGCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGA 300
Query 341 AGAAGGTGAAGAACATTAAGCATAACGGGAACATCTCGTTTGATGATGTGACTGAGATTG 400
||||||||||||||||||| || || ||||| || |||||||||||||||| ||||||||
Sbjct 301 AGAAGGTGAAGAACATTAAACACAATGGGAATATTTCGTTTGATGATGTGATTGAGATTG 360
Query 401 CTAGGATCATGAGACCTAGATCTATTGCTAAGGAATTGAGTGGAACAGTGAGGGAGATTC 460
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 361 CTAGGATCATGAGACCTAGATCTATTGCTAAGGAATTGAGTGGAACTGTGAGAGAGATTC 420
Query 461 TGGGAACTTGTGTGTCTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAAC 520
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGGGACTTGTGTATCTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAAC 480
Query 521 AGGAGATTCAAGATGGTGAAGTTGAGATTCCTGAGAACTGAAGAATTTGGAAATGATGGT 580
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 481 AGGAGATTCAAGATGGTGAAGTTGAGATTCCTGAGAATTGAAGAATTTGGAAATGGTGTT 540
Query 581 GT 582
||
Sbjct 541 GT 542
> Ahg938244 jgi|Araly1|938244|scaffold_502435.1
Length=549
Score = 542 bits (293), Expect = 2e-153
Identities = 439/509 (86%), Gaps = 12/509 (2%)
Strand=Plus/Plus
Query 61 ATGCCGCCAAAGTTGGATCCGAGTCAGATCGTTGACGTGTACGTCCGAGTAACCGGGGGA 120
|||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| |||
Sbjct 28 ATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGATGTGTACGTCCGTGTAACCGGAGGA 87
Query 121 GAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAA-ATCGGTCCGCTAGGTCTCGCACCAAA 179
||||||||||| || |||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct 88 GAAGTCGGAGCCGCCAGTTCTCTAGCT-CCAAAGATCGGTCCACTCGGTCTCGCACCAAA 146
Query 180 GAAGATCGGAGAAGATATCGCGAAAGAAACCGC-AAAGGAATGGAAAGGA-TTACGTGTA 237
||||||||||||||| ||||||||||| || || |||| ||||||||||| || |||||
Sbjct 147 GAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAAG-AATGGAAAGGACTT-CGTGTC 204
Query 238 ACCGTCAAGCTCACAGTGCAGAATCGTCAGGCGAAAGTGACGGTGGTTCCATCAGCAGCA 297
||||| ||||| || || ||||||||||| || || || || ||||| ||||| || |||
Sbjct 205 ACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTCACCGTGGTGCCATCTGCTGCA 264
Query 298 GCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGAAGAAGGTGAAGAACATT 357
|| || ||||||||||||||||| ||||| |||||||| | || |||||||||||||||
Sbjct 265 GCTCTTGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGACCGCAAAAAGGTGAAGAACATT 324
Query 358 AAGCATAACGGGAACATCTCGTTT-GATGATGTGACTGAGATTGCTAGGATCATGAGACC 416
||||||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||| ||
Sbjct 325 AAGCATAACGGTAACATCTC-TTTCGATGATGTGATTGAGATTGCTAGGATTATGAGGCC 383
Query 417 TAGATCTATTGCTAAGGAATTGAGTGGAACAGTGAGGGAGATTCT-GGGAACTTGTGTGT 475
|||||||||||||||||| ||||||| || |||||||||||||| |||| | ||||| |
Sbjct 384 TAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAGATTCTTGGGA-CGTGTGTCT 442
Query 476 CTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAACAGGAGATTCAAGATG 535
|||| || || ||||| ||||||||||| || || ||| |||| |||||||||||||| |
Sbjct 443 CTGTGGGATGCACTGTTGATGGGAAAGACCCGAAGGATCTTCAGCAGGAGATTCAAGAAG 502
Query 536 GTGAAGTT-GAGATTCCTGAGAACTGAAG 563
|||| | | || ||||||||||||| |||
Sbjct 503 GTGA-GATCGATATTCCTGAGAACTAAAG 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5