BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G37195.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934368 jgi|Araly1|934368|scaffold_402356.1                        695    0.0  


> Ahg934368 jgi|Araly1|934368|scaffold_402356.1
Length=437

 Score =  695 bits (376),  Expect = 0.0
 Identities = 415/433 (96%), Gaps = 6/433 (1%)
 Strand=Plus/Plus

Query  11   GAGGAGGAAGAATGGCGGGAGGATCTGAGAGGAAGACGATACTGGTGGGTTTGGTTCTAG  70
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  11   GAGGAGGAAGAATGGCGGGAGGATCTGAGAGAAAGACGATACTGGTGGGTTTGGTTCTAG  70

Query  71   CTCTTGTTCTTGGTATCGGTGTTTACTTAAGGCTTTGGACTATCGATTATACTCTATCTT  130
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  71   CTCTTGTTCTTGGTATCGCTGTTTACTTAAGGCTTTGGACTATCGATTATACTCTATCTT  130

Query  131  CCGATGACACAGAGCGCTTAAGGAGACAGTTTGATTTGGCAAATAGAGAGGCAATGGATG  190
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  131  CCGATGACACAGAACGCTTAAGGAGACAGTTTGATTTGGCAAATAGAGAGGCAATGGATG  190

Query  191  AATCTGCAGATTGGCGGAGAATGTTTGATAAGGAAGCTGAGAAAGCTTCTAAATGTAACA  250
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  AATCTGCAGAATGGCGGAGAATGTTTGATAAGGAAGCTGAGAAAGCTTCTAAATGTAACA  250

Query  251  CAGAACTTTCACTGATCAAAGAGTCATCTGGGAATGGAAACACCTTTACCTCCAATCAAA  310
            |||||||| | |||||||||||||||||||||||||||||||| ||| |    |||||||
Sbjct  251  CAGAACTTGCTCTGATCAAAGAGTCATCTGGGAATGGAAACAC-TTT-C----AATCAAA  304

Query  311  AGCTAGAGTCATTAAAAAAGGAAAATGCGGCATTGCTCATTCAAATAGAGACATTAAAAC  370
            |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  305  AGCTGGAGTCATTACAAAAGGAAAATGCGGCATTGCTCATTCGAATAGAGACATTAAAAC  364

Query  371  AAGAGCTTGAAGCTTCACGGTTAAAGTGCCACTCACGGCAGGCACCCCGTTAGAATACTG  430
            |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||
Sbjct  365  AAGAGCTTGAAGCTTCCCGGTTAAAGTGCCACTCACGACAGGCACCCCGTTAGGATACTG  424

Query  431  TTCTTGATATGTT  443
            |||||||||||||
Sbjct  425  TTCTTGATATGTT  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5