BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37200.1 Length=737 Score E Sequences producing significant alignments: (Bits) Value Ahg934369 jgi|Araly1|934369|scaffold_402357.1 874 0.0 > Ahg934369 jgi|Araly1|934369|scaffold_402357.1 Length=583 Score = 874 bits (473), Expect = 0.0 Identities = 524/549 (95%), Gaps = 2/549 (0%) Strand=Plus/Plus Query 51 ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTTGATGCTCTTCCGGTGGCTCCTACT 110 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 21 ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTCGATGCGCTTCCGGTGGCTCCGACT 80 Query 111 GCCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACC 170 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 ACCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACC 140 Query 171 ACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGTTCCC-GCTCTTATCTCCGTCTCCGT 229 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 141 ACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGT-CCCAGCTCTTATCTCCGTCTCCGT 199 Query 230 CATGGTCACTACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGT 289 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 CATGGTCACCACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGT 259 Query 290 TAGCCTGCAAAGCCTGTGGAGCTTGTCTCTTTTTATTATCGATGCTTATGCTCTTCTGGT 349 |||||||||||| |||||||||||||||| ||| | |||||||||||||||| ||||| Sbjct 260 CAGCCTGCAAAGCATGTGGAGCTTGTCTCTATTTCTCGTCGATGCTTATGCTCTACTGGT 319 Query 350 GAGAAGAAGCCTTCGAAATCACTCCGTTGTTCAGTGTTTCACTATTGGAGATGGAGTCAC 409 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 320 GAGAAGAAGCCTTCGGAATCACTCTGTTGTTCAGTGTTTCACTATTGGAGATGGTGTCAC 379 Query 410 ATCGACGCTCACGTTTGCAGCTGCATCTGCTTCTGCTGGCATAACTGTACTCATCAACGA 469 |||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 380 ATCGACCCTTACGTTTGCAGCTGCATCTGCGTCTGCTGGCATAACCGTACTCATCAACGA 439 Query 470 TCTTGGACAATGTAACGTGAATCACTGCACAAGGTTTGAGACTGCCACAGCAATGGCCTT 529 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 440 TCTTGGACAATGTAATGTGAATCACTGCACAAGGTTTGAGACCGCCACAGCAATGGCTTT 499 Query 530 CATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCA 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 500 CATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCA 559 Query 590 CTAAATATA 598 |||||||| Sbjct 560 TTAAATATA 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27143516904 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5