BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37200.1
Length=737
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934369 jgi|Araly1|934369|scaffold_402357.1 874 0.0
> Ahg934369 jgi|Araly1|934369|scaffold_402357.1
Length=583
Score = 874 bits (473), Expect = 0.0
Identities = 524/549 (95%), Gaps = 2/549 (0%)
Strand=Plus/Plus
Query 51 ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTTGATGCTCTTCCGGTGGCTCCTACT 110
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 21 ATGATGAACGTGAGCCGGCCGGCGATTCACCCGGTCGATGCGCTTCCGGTGGCTCCGACT 80
Query 111 GCCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACC 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ACCGGAGCGATCGATAGACCACCAGTGAGGATGAAGGATGTGCAAGGCATGCCCGGAACC 140
Query 171 ACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGTTCCC-GCTCTTATCTCCGTCTCCGT 229
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 141 ACCGGCGGTCTCATCCTCCGTCTCTCTCAGTTCGT-CCCAGCTCTTATCTCCGTCTCCGT 199
Query 230 CATGGTCACTACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGT 289
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CATGGTCACCACCTCCGACTTCCGCTCCGCCACCGCATTCTGTTGCTTGGTTCTTGCGGT 259
Query 290 TAGCCTGCAAAGCCTGTGGAGCTTGTCTCTTTTTATTATCGATGCTTATGCTCTTCTGGT 349
|||||||||||| |||||||||||||||| ||| | |||||||||||||||| |||||
Sbjct 260 CAGCCTGCAAAGCATGTGGAGCTTGTCTCTATTTCTCGTCGATGCTTATGCTCTACTGGT 319
Query 350 GAGAAGAAGCCTTCGAAATCACTCCGTTGTTCAGTGTTTCACTATTGGAGATGGAGTCAC 409
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 320 GAGAAGAAGCCTTCGGAATCACTCTGTTGTTCAGTGTTTCACTATTGGAGATGGTGTCAC 379
Query 410 ATCGACGCTCACGTTTGCAGCTGCATCTGCTTCTGCTGGCATAACTGTACTCATCAACGA 469
|||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 380 ATCGACCCTTACGTTTGCAGCTGCATCTGCGTCTGCTGGCATAACCGTACTCATCAACGA 439
Query 470 TCTTGGACAATGTAACGTGAATCACTGCACAAGGTTTGAGACTGCCACAGCAATGGCCTT 529
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 440 TCTTGGACAATGTAATGTGAATCACTGCACAAGGTTTGAGACCGCCACAGCAATGGCTTT 499
Query 530 CATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CATCAGCTGGTTTGCTGTGTCTCCTTCCTTTATTCTCAACTTCTGGTCCTTAGCCACCCA 559
Query 590 CTAAATATA 598
||||||||
Sbjct 560 TTAAATATA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27143516904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5