BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G37210.2 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1 872 0.0 Ahg348439 jgi|Araly1|348439|fgenesh1_pg.C_scaffold_5001831 477 7e-134 Ahg481677 jgi|Araly1|481677|fgenesh2_kg.4__737__AT2G28305.1 257 1e-67 Ahg949598 jgi|Araly1|949598|scaffold_801485.1 183 2e-45 Ahg949979 jgi|Araly1|949979|scaffold_801866.1 152 5e-36 Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226 152 5e-36 > Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1 Length=1006 Score = 872 bits (472), Expect = 0.0 Identities = 534/563 (95%), Gaps = 8/563 (1%) Strand=Plus/Plus Query 529 GTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATAC 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 447 GTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATAC 506 Query 589 ATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCA 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 ATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCA 566 Query 649 TTGACAAAGCAGTCGAAGAAGGATTTATTAGCCCGACTGCTCGTGAGATCATCGTCTCCG 708 |||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||| Sbjct 567 TTGACAAAGCTGTCGAAGAAGGATTCATCAGCCCGAATGCTCGTGAGATCATCGTCTCTT 626 Query 709 CACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGGG 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 627 CACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGTG 686 Query 769 TTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTGATTCA 828 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 687 TTGCAACTAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCGTCTGAAGAGTGATTAA 746 Query 829 GATCAAGATTATCTATATAACTATTTAAAATATTTTATAATATAGATTTGAAACTTTCGG 888 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 747 GATCAAGATTATCAATATAACTATTTAAAATATTTTATAATATAGATTTGAAACTTTCGA 806 Query 889 AGATTTCATGATTT-AATCTTACTAAAAAAGGAAGGGATAGATTTTGATTAGTTGGGTAA 947 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 807 AGATTTCATGATTTTAATCTTACTAAAAAAGGAAGGAATAGATTTTGATTAGTTGGGTAA 866 Query 948 AATTTCCACTTCGGAGGAGATT-TTTA-ATGTAAATTATTAGTAATGTCTTTTTAAGTCG 1005 |||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||| ||| Sbjct 867 AATTTCCACTACGGAGGAAATTCTTTTTATGTAAATTATTAGTAATGTCTTTTTAACTCG 926 Query 1006 AAGCTAAATGTTTTTAGTTTATGTAATTGTCGCAACTCTCTACTAT-TG-TAAGTTGTAA 1063 ||||||||||||||||||| |||||| |||||||||||||| |||| | || |||||| Sbjct 927 AAGCTAAATGTTTTTAGTTGATGTAAGTGTCGCAACTCTCT-CTATCTACTA--TTGTAA 983 Query 1064 CCAAGACAAGTTTCACACTTTCG 1086 |||||||||||||||||| |||| Sbjct 984 CCAAGACAAGTTTCACACCTTCG 1006 Score = 745 bits (403), Expect = 0.0 Identities = 432/446 (97%), Gaps = 1/446 (0%) Strand=Plus/Plus Query 12 ACTCGTAAAACTGTCTTAAGAAATTAGATTCTTGTGCTCAAAGAAACCTTAAACTGCTTA 71 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ACTCGTAAAACAGTTTTAAGAAATTAGATTCTTGTGCTCAAAGAAACCTTAAACTGTTTA 60 Query 72 CC-TTTTCTCTTTCCGCCCAAAATTTAGAATCACATGGAAATCAAAGGTGAATCGATGCA 130 || |||||||||||| ||||| |||||||||| ||||| |||||||||||| ||||||| Sbjct 61 CCTTTTTCTCTTTCCAACCAAAGTTTAGAATCAAATGGAGATCAAAGGTGAAACGATGCA 120 Query 131 AAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAGGCAAGAAGAGCAG 190 ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct 121 AAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAGGCAGTCAAGGCAAGAAGAGTAG 180 Query 191 TTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGT 250 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 TTACCAAGATGCTGCTGTTGATCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGT 240 Query 251 CTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGG 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGG 300 Query 311 TCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAAC 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAAC 360 Query 371 AGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCA 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCA 420 Query 431 CTCTGATGCTTTTATTGCCTTACCAG 456 |||||||||||||||||||||||||| Sbjct 421 CTCTGATGCTTTTATTGCCTTACCAG 446 > Ahg348439 jgi|Araly1|348439|fgenesh1_pg.C_scaffold_5001831 Length=651 Score = 477 bits (258), Expect = 7e-134 Identities = 313/340 (92%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 118 GTGAATCGATGCAAAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAG 177 ||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 17 GTGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTCTGTGGAAGCAGCCAAG 76 Query 178 GCAAGAAGAGCAGTTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGA 237 |||||||||| |||||||||||||||||||| || || |||||| || |||||| ||||| Sbjct 77 GCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACAAATTGGTTTTAAGGA 136 Query 238 ATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG 297 | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 137 ACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCACAAGCTG 196 Query 298 TTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGT 357 |||||||||||||||| |||||||||||| | ||||||||||| |||||||||||||||| Sbjct 197 TTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAGAGT 256 Query 358 TGACTGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTG 417 |||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||| | Sbjct 257 TGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGGTATGCATCAAAGAAAAGCAG 316 Query 418 AGATGGCTA-AGCACTCTGATGCTTTTATTGCCTTACCAG 456 ||||||||| | |||||||||||||||||||| ||||||| Sbjct 317 AGATGGCTAGA-CACTCTGATGCTTTTATTGCTTTACCAG 355 Score = 303 bits (164), Expect = 1e-81 Identities = 257/301 (85%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 529 GTGGTTATGGAACACTTGAAGA-ATTGCTT-GAAGTCATAACTTGGGCTCAGCTTGGTAT 586 |||| ||||||||||||||||| || || || |||||||| ||||||||||||||||| Sbjct 356 GTGGATATGGAACACTTGAAGAGCTT--TTGGAGGTCATAACATGGGCTCAGCTTGGTAT 413 Query 587 ACATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATT 646 ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 414 ACATGACAAACCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTT 473 Query 647 CATTGACAAAGCAGTCGAAGAAGGATTT-ATTAGCCCGA-CTGCTCGTGAGATCATCGTC 704 |||||| ||||| || |||||||| ||| || || ||| | || || ||||||| | Sbjct 474 CATTGATAAAGCCGTTGAAGAAGG-TTTCATCAGTACGAAC-GCACGCCAGATCATAATT 531 Query 705 TCCGCACCTACTGCTAAAGAGCTGGTGAAA-AAGCTAGAGGAATATGCACCTTGCCATGA 763 || |||||||||||||| ||||| || ||| ||| | ||||||||| | ||||||||||| Sbjct 532 TCTGCACCTACTGCTAAGGAGCTTGT-AAAGAAGTTGGAGGAATATTCGCCTTGCCATGA 590 Query 764 AAGGGTTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTG 823 ||| ||||| || ||||||||||||||||| || |||||||| ||||| |||||||| || Sbjct 591 AAGTGTTGCCACTAAGCTTTGTTGGGAGATAGAGCGGATTGGCTACTCTTCTGAAGACTG 650 Query 824 A 824 | Sbjct 651 A 651 > Ahg481677 jgi|Araly1|481677|fgenesh2_kg.4__737__AT2G28305.1 Length=1051 Score = 257 bits (139), Expect = 1e-67 Identities = 266/326 (82%), Gaps = 14/326 (4%) Strand=Plus/Plus Query 136 CAAAGTTC-AGAAGAATCTGTGTCTTCTGTGGAAGCAG-CCAAGGCAAGAAGA-GCAGTT 192 |||| ||| || ||||| ||||| || |||||||| || | || || || | ||||| Sbjct 85 CAAAATTCAAG-AGAATATGTGTGTTTTGTGGAAGTAGTGC-TGGTAATAA-ATCCAGTT 141 Query 193 ACCAAGATGCTGCTGTTGACCTCGGCAAC-GAACTGGTTTCAAGGAATATTGATCTAGTC 251 || ||||||||||| | || ||||| ||| |||||||| || || ||||| ||||| ||| Sbjct 142 ACAAAGATGCTGCTATCGAGCTCGG-AACTGAACTGGTATCGAGAAATATCGATCTTGTC 200 Query 252 TATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG--TTCATGATGGTG 309 ||||| || |||||||| || || ||||||||| |||| ||||||| |||| |||| | Sbjct 201 TATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTCTCAAGCTGTTTTCA--ATGGAG 258 Query 310 GTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAA 369 |||| ||||| ||||| | || |||||||| || ||||| |||||| | || || || | Sbjct 259 GTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCCAAGAGAGATAACAGGAGAGA 318 Query 370 CAGTAGGAGAAGT-AAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAG 428 |||| |||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 319 CAGTGGGAGAAGTGAAG-GCAGTAGCAGACATGCACCAAAGGAAAGCTGAGATGGCTAAG 377 Query 429 CACTCTGATGCTTTTATTGCCTTACC 454 ||||||||||||||||| || ||||| Sbjct 378 CACTCTGATGCTTTTATCGCTTTACC 403 > Ahg949598 jgi|Araly1|949598|scaffold_801485.1 Length=464 Score = 183 bits (99), Expect = 2e-45 Identities = 120/130 (92%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 231 TCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCA 290 ||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 136 TCACGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCA 195 Query 291 CAAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCT 350 ||||||||||||||| ||||||| |||||||||||| | ||||||||||| ||||||||| Sbjct 196 CAAGCTGTTCATGATAGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT 255 Query 351 AGAGAG-TTG 359 |||||| ||| Sbjct 256 AGAGAGGTTG 265 > Ahg949979 jgi|Araly1|949979|scaffold_801866.1 Length=272 Score = 152 bits (82), Expect = 5e-36 Identities = 92/97 (95%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 227 GGTTTCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGT 286 ||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 62 GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT 121 Query 287 TTCACAAGCTGTTCATGATGGTGGTCGTCATGTTATT 323 ||||||||||||||||||||||||||| ||||||||| Sbjct 122 TTCACAAGCTGTTCATGATGGTGGTCGCCATGTTATT 158 > Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226 Length=624 Score = 152 bits (82), Expect = 5e-36 Identities = 180/225 (80%), Gaps = 15/225 (7%) Strand=Plus/Plus Query 131 AAAG-TCAAAG-TTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAA-GGCAAGAAGAG 187 |||| |||| | || || || || || ||||| ||||| || || ||| ||||| || || Sbjct 14 AAAGTTCAAGGTTTAAG-AGCATTTGCGTCTTTTGTGGGAGTAG-CAATGGCAACAA-AG 70 Query 188 C-AGTTACCAAGATGCTGCTGTTGACCTCGG-CAACGAACTGGT-TTCAAGGAATATTGA 244 | ||||| |||||||| || |||| | || ||| ||| |||| | ||||| ||||| Sbjct 71 CTAGTTATCAAGATGCAGCCATTGA-TTTGGCCAAAGAATTGGTGAT-GAGGAAGATTGA 128 Query 245 TCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGA 304 ||| || ||||| || || |||||||| || ||||||||||| || |||||||||||||| Sbjct 129 TCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCTGTTCATGA 188 Query 305 TGGTGGTCGTCATGTTATTGGAATCATTCCCAA-GAC-CCTCATG 347 |||||||||||||||||||||| |||| ||||| | | ||||||| Sbjct 189 TGGTGGTCGTCATGTTATTGGAGTCAT-CCCAAAG-CTCCTCATG 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5