BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37210.2
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1 872 0.0
Ahg348439 jgi|Araly1|348439|fgenesh1_pg.C_scaffold_5001831 477 7e-134
Ahg481677 jgi|Araly1|481677|fgenesh2_kg.4__737__AT2G28305.1 257 1e-67
Ahg949598 jgi|Araly1|949598|scaffold_801485.1 183 2e-45
Ahg949979 jgi|Araly1|949979|scaffold_801866.1 152 5e-36
Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226 152 5e-36
> Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1
Length=1006
Score = 872 bits (472), Expect = 0.0
Identities = 534/563 (95%), Gaps = 8/563 (1%)
Strand=Plus/Plus
Query 529 GTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATAC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GTGGTTATGGAACACTTGAAGAATTGCTTGAAGTCATAACTTGGGCTCAGCTTGGTATAC 506
Query 589 ATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 ATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATTCA 566
Query 649 TTGACAAAGCAGTCGAAGAAGGATTTATTAGCCCGACTGCTCGTGAGATCATCGTCTCCG 708
|||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 567 TTGACAAAGCTGTCGAAGAAGGATTCATCAGCCCGAATGCTCGTGAGATCATCGTCTCTT 626
Query 709 CACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGGG 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 627 CACCTACTGCTAAAGAGCTGGTGAAAAAGCTAGAGGAATATGCACCTTGCCATGAAAGTG 686
Query 769 TTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTGATTCA 828
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 687 TTGCAACTAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCGTCTGAAGAGTGATTAA 746
Query 829 GATCAAGATTATCTATATAACTATTTAAAATATTTTATAATATAGATTTGAAACTTTCGG 888
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GATCAAGATTATCAATATAACTATTTAAAATATTTTATAATATAGATTTGAAACTTTCGA 806
Query 889 AGATTTCATGATTT-AATCTTACTAAAAAAGGAAGGGATAGATTTTGATTAGTTGGGTAA 947
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 807 AGATTTCATGATTTTAATCTTACTAAAAAAGGAAGGAATAGATTTTGATTAGTTGGGTAA 866
Query 948 AATTTCCACTTCGGAGGAGATT-TTTA-ATGTAAATTATTAGTAATGTCTTTTTAAGTCG 1005
|||||||||| ||||||| ||| ||| |||||||||||||||||||||||||||| |||
Sbjct 867 AATTTCCACTACGGAGGAAATTCTTTTTATGTAAATTATTAGTAATGTCTTTTTAACTCG 926
Query 1006 AAGCTAAATGTTTTTAGTTTATGTAATTGTCGCAACTCTCTACTAT-TG-TAAGTTGTAA 1063
||||||||||||||||||| |||||| |||||||||||||| |||| | || ||||||
Sbjct 927 AAGCTAAATGTTTTTAGTTGATGTAAGTGTCGCAACTCTCT-CTATCTACTA--TTGTAA 983
Query 1064 CCAAGACAAGTTTCACACTTTCG 1086
|||||||||||||||||| ||||
Sbjct 984 CCAAGACAAGTTTCACACCTTCG 1006
Score = 745 bits (403), Expect = 0.0
Identities = 432/446 (97%), Gaps = 1/446 (0%)
Strand=Plus/Plus
Query 12 ACTCGTAAAACTGTCTTAAGAAATTAGATTCTTGTGCTCAAAGAAACCTTAAACTGCTTA 71
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ACTCGTAAAACAGTTTTAAGAAATTAGATTCTTGTGCTCAAAGAAACCTTAAACTGTTTA 60
Query 72 CC-TTTTCTCTTTCCGCCCAAAATTTAGAATCACATGGAAATCAAAGGTGAATCGATGCA 130
|| |||||||||||| ||||| |||||||||| ||||| |||||||||||| |||||||
Sbjct 61 CCTTTTTCTCTTTCCAACCAAAGTTTAGAATCAAATGGAGATCAAAGGTGAAACGATGCA 120
Query 131 AAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAGGCAAGAAGAGCAG 190
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 121 AAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAGGCAGTCAAGGCAAGAAGAGTAG 180
Query 191 TTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGT 250
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTACCAAGATGCTGCTGTTGATCTCGGCAACGAACTGGTTTCAAGGAATATTGATCTAGT 240
Query 251 CTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGATGGTGG 300
Query 311 TCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAAC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAAC 360
Query 371 AGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCA 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAGCA 420
Query 431 CTCTGATGCTTTTATTGCCTTACCAG 456
||||||||||||||||||||||||||
Sbjct 421 CTCTGATGCTTTTATTGCCTTACCAG 446
> Ahg348439 jgi|Araly1|348439|fgenesh1_pg.C_scaffold_5001831
Length=651
Score = 477 bits (258), Expect = 7e-134
Identities = 313/340 (92%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 118 GTGAATCGATGCAAAAGTCAAAGTTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAAG 177
||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 17 GTGAAACCATGCAAAAGTCAAAGTTTGGAAGAATCTGTGTGTTCTGTGGAAGCAGCCAAG 76
Query 178 GCAAGAAGAGCAGTTACCAAGATGCTGCTGTTGACCTCGGCAACGAACTGGTTTCAAGGA 237
|||||||||| |||||||||||||||||||| || || |||||| || |||||| |||||
Sbjct 77 GCAAGAAGAGTAGTTACCAAGATGCTGCTGTGGATCTAGGCAACAAATTGGTTTTAAGGA 136
Query 238 ATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG 297
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 137 ACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCACAAGCTG 196
Query 298 TTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGT 357
|||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 197 TTCATGATGGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCTAGAGAGT 256
Query 358 TGACTGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTG 417
|||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
Sbjct 257 TGACCGGTGAAACAGTAGGAGAAGTAAGAGCAGTTGCAGGTATGCATCAAAGAAAAGCAG 316
Query 418 AGATGGCTA-AGCACTCTGATGCTTTTATTGCCTTACCAG 456
||||||||| | |||||||||||||||||||| |||||||
Sbjct 317 AGATGGCTAGA-CACTCTGATGCTTTTATTGCTTTACCAG 355
Score = 303 bits (164), Expect = 1e-81
Identities = 257/301 (85%), Gaps = 10/301 (3%)
Strand=Plus/Plus
Query 529 GTGGTTATGGAACACTTGAAGA-ATTGCTT-GAAGTCATAACTTGGGCTCAGCTTGGTAT 586
|||| ||||||||||||||||| || || || |||||||| |||||||||||||||||
Sbjct 356 GTGGATATGGAACACTTGAAGAGCTT--TTGGAGGTCATAACATGGGCTCAGCTTGGTAT 413
Query 587 ACATGACAAGCCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTCTGCTCTCATT 646
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 414 ACATGACAAACCGGTGGGTTTGCTCAATGTTGATGGATACTACAACTCTTTGCTCTCTTT 473
Query 647 CATTGACAAAGCAGTCGAAGAAGGATTT-ATTAGCCCGA-CTGCTCGTGAGATCATCGTC 704
|||||| ||||| || |||||||| ||| || || ||| | || || ||||||| |
Sbjct 474 CATTGATAAAGCCGTTGAAGAAGG-TTTCATCAGTACGAAC-GCACGCCAGATCATAATT 531
Query 705 TCCGCACCTACTGCTAAAGAGCTGGTGAAA-AAGCTAGAGGAATATGCACCTTGCCATGA 763
|| |||||||||||||| ||||| || ||| ||| | ||||||||| | |||||||||||
Sbjct 532 TCTGCACCTACTGCTAAGGAGCTTGT-AAAGAAGTTGGAGGAATATTCGCCTTGCCATGA 590
Query 764 AAGGGTTGCAACGAAGCTTTGTTGGGAGATGGAACGGATTGGTTACTCCTCTGAAGAGTG 823
||| ||||| || ||||||||||||||||| || |||||||| ||||| |||||||| ||
Sbjct 591 AAGTGTTGCCACTAAGCTTTGTTGGGAGATAGAGCGGATTGGCTACTCTTCTGAAGACTG 650
Query 824 A 824
|
Sbjct 651 A 651
> Ahg481677 jgi|Araly1|481677|fgenesh2_kg.4__737__AT2G28305.1
Length=1051
Score = 257 bits (139), Expect = 1e-67
Identities = 266/326 (82%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 136 CAAAGTTC-AGAAGAATCTGTGTCTTCTGTGGAAGCAG-CCAAGGCAAGAAGA-GCAGTT 192
|||| ||| || ||||| ||||| || |||||||| || | || || || | |||||
Sbjct 85 CAAAATTCAAG-AGAATATGTGTGTTTTGTGGAAGTAGTGC-TGGTAATAA-ATCCAGTT 141
Query 193 ACCAAGATGCTGCTGTTGACCTCGGCAAC-GAACTGGTTTCAAGGAATATTGATCTAGTC 251
|| ||||||||||| | || ||||| ||| |||||||| || || ||||| ||||| |||
Sbjct 142 ACAAAGATGCTGCTATCGAGCTCGG-AACTGAACTGGTATCGAGAAATATCGATCTTGTC 200
Query 252 TATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG--TTCATGATGGTG 309
||||| || |||||||| || || ||||||||| |||| ||||||| |||| |||| |
Sbjct 201 TATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTCTCAAGCTGTTTTCA--ATGGAG 258
Query 310 GTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAA 369
|||| ||||| ||||| | || |||||||| || ||||| |||||| | || || || |
Sbjct 259 GTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCCAAGAGAGATAACAGGAGAGA 318
Query 370 CAGTAGGAGAAGT-AAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAG 428
|||| |||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 319 CAGTGGGAGAAGTGAAG-GCAGTAGCAGACATGCACCAAAGGAAAGCTGAGATGGCTAAG 377
Query 429 CACTCTGATGCTTTTATTGCCTTACC 454
||||||||||||||||| || |||||
Sbjct 378 CACTCTGATGCTTTTATCGCTTTACC 403
> Ahg949598 jgi|Araly1|949598|scaffold_801485.1
Length=464
Score = 183 bits (99), Expect = 2e-45
Identities = 120/130 (92%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 231 TCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCA 290
||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 136 TCACGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGTTTCA 195
Query 291 CAAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCT 350
||||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct 196 CAAGCTGTTCATGATAGTGGTCGCCATGTTATTGGAGTTATTCCCAAGACACTCATGCCT 255
Query 351 AGAGAG-TTG 359
|||||| |||
Sbjct 256 AGAGAGGTTG 265
> Ahg949979 jgi|Araly1|949979|scaffold_801866.1
Length=272
Score = 152 bits (82), Expect = 5e-36
Identities = 92/97 (95%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 227 GGTTTCAAGGAATATTGATCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGT 286
||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 62 GGTTTTAAGGAACATTGATCTAGTCTATGGAGGTGGAAGCATAGGTTTGATGGGTTTGGT 121
Query 287 TTCACAAGCTGTTCATGATGGTGGTCGTCATGTTATT 323
||||||||||||||||||||||||||| |||||||||
Sbjct 122 TTCACAAGCTGTTCATGATGGTGGTCGCCATGTTATT 158
> Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226
Length=624
Score = 152 bits (82), Expect = 5e-36
Identities = 180/225 (80%), Gaps = 15/225 (7%)
Strand=Plus/Plus
Query 131 AAAG-TCAAAG-TTCAGAAGAATCTGTGTCTTCTGTGGAAGCAGCCAA-GGCAAGAAGAG 187
|||| |||| | || || || || || ||||| ||||| || || ||| ||||| || ||
Sbjct 14 AAAGTTCAAGGTTTAAG-AGCATTTGCGTCTTTTGTGGGAGTAG-CAATGGCAACAA-AG 70
Query 188 C-AGTTACCAAGATGCTGCTGTTGACCTCGG-CAACGAACTGGT-TTCAAGGAATATTGA 244
| ||||| |||||||| || |||| | || ||| ||| |||| | ||||| |||||
Sbjct 71 CTAGTTATCAAGATGCAGCCATTGA-TTTGGCCAAAGAATTGGTGAT-GAGGAAGATTGA 128
Query 245 TCTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGA 304
||| || ||||| || || |||||||| || ||||||||||| || ||||||||||||||
Sbjct 129 TCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCTGTTCATGA 188
Query 305 TGGTGGTCGTCATGTTATTGGAATCATTCCCAA-GAC-CCTCATG 347
|||||||||||||||||||||| |||| ||||| | | |||||||
Sbjct 189 TGGTGGTCGTCATGTTATTGGAGTCAT-CCCAAAG-CTCCTCATG 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5