BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37220.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482714 jgi|Araly1|482714|fgenesh2_kg.4__1774__AT2G37220.1 1890 0.0
Ahg348440 jgi|Araly1|348440|fgenesh1_pg.C_scaffold_5001832 346 3e-94
> Ahg482714 jgi|Araly1|482714|fgenesh2_kg.4__1774__AT2G37220.1
Length=1284
Score = 1890 bits (1023), Expect = 0.0
Identities = 1178/1250 (94%), Gaps = 21/1250 (2%)
Strand=Plus/Plus
Query 72 TCTTCCCATGGCTGCTTCAGCTTCGTCTCTCGCTCTCTCTTCCTTCAACCCTAAATCTCT 131
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 45 TCTTCCCATGGCTGCTTCAGCTTCTTCTCTCGCTCTCTCTTCCTTCAACCCTAAATCTCT 104
Query 132 TCCTTTCGGCGTCTCCAGACCTGCCTCCGTTTCCCTCTTATCTCCTTCCCTCTCCTTTAA 191
||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 105 TCCTTTCTGCGTCTCCAGACCAGCCTCCGTTTCCCTCTTACCTCCTTCCCTCTCCTTTAA 164
Query 192 ACTCAATTCCGACTCCGTTTCCTTCTCCATCGCCGCCAAATGGAACTCTCCCGCTTCTCG 251
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 165 ACTCAATTCCGACTCCGTTTCCTTCTCCATCGCCGGCAAATGGAACTCTCCCGCTTCTCG 224
Query 252 CTTCGCCCGTAACGTTGCGATTACCTCAGAGTTCGAGGTGGAAGAAGATGGTTTCGCTGA 311
||||| |||||||||||| || |||||||||||||||||||||||||| |||| ||||||
Sbjct 225 CTTCGTCCGTAACGTTGCAATCACCTCAGAGTTCGAGGTGGAAGAAGACGGTTGCGCTGA 284
Query 312 CGTCGCTCCGCCAAAAGAGCAATCTTTCTCTGCTGACCTTAAACTCTTCGTTGGTAACCT 371
| ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 285 TGACGCAGCGCCACAAGAGCAATCTTTCTCTGCTGACCTCAAACTCTTCGTTGGTAACCT 344
Query 372 TCCTTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATGTTGA 431
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TCCCTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATGTTGA 404
Query 432 GATGGTTGAGGTAATCTATGACAAAATTACAGGAAGAAGCAGAGGTTTTGGATTCGTGAC 491
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 405 GATGGTTGAGGTAATCTATGACAAAGTGACAGGAAGAAGCAGAGGTTTTGGATTCGTGAC 464
Query 492 TATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTCAGCAGTTCAATGGCTATGAGTTGGA 551
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 465 TATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTAATCAGTTCAATGGCTATGAGTTGGA 524
Query 552 TGGTAGACCTTTGAGAGTCAATGCTGGTCCCCCACCACCAAAGAGGGAAGATGGTTTCTC 611
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 525 TGGTAGACCTTTGAGAGTTAATGCTGGTCCTCCTCCACCAAAGAGGGAAGATGGTTTCTC 584
Query 612 CAGAGGACCTAGGAGCAGCTTTGGAAGCTCAGGTTCTGGATATGGAGGAGGTGGTGGTTC 671
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CAGAGGACCTAGAAGCAGCTTTGGAAGCTCAGGTTCTGGATATGGAGGAGGTGGTGGTTC 644
Query 672 TGGTGCTGGTTCAGGAAACCGTGTTTATGTGGGTAACCTCTCTTGGGGAGTTGATGACAT 731
||||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||
Sbjct 645 TGGTGCTGGTTCAGGAAACCGGGTTTATGTTGGCAACCTTTCTTGGGGAGTTGATGACAT 704
Query 732 GGCTCTTGAGAGTTTGTTCTCGGAGCAAGGAAAGGTTGTTGAGGCCAGAGTCATCTACGA 791
|||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 705 GGCTCTTGAGTGTTTGTTCGCGGAGCAAGGAAAAGTTGTTGAGGCTAGAGTCATCTACGA 764
Query 792 CAGGGACAGTGGTCGATCCAAGGGTTTTGGATTTGTGACATAC-GACTCTTCTCAAGAGG 850
||| ||||| || ||||||||||||||||| |||||||| ||| | ||||||| ||||||
Sbjct 765 CAGAGACAGCGGGCGATCCAAGGGTTTTGGGTTTGTGACTTACAG-CTCTTCTAAAGAGG 823
Query 851 TCCAAAATGCCATCAAGTCCTTGGATGGTGCTGATTTGGACGGTAGACAAATTAGAGTCT 910
|||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 824 TCCAAAATGCCATCAATTCCTTGAATGGTGCTGATTTGGACGGCAGACAAATTAGAGTCT 883
Query 911 CGGAAGCTGAGGCTAGGCCTCCAAGGCGCCAATATTGAGCACCAATCTATGACTTCCTAT 970
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 884 CGGAAGCTGAGGCTAGGCCTCCAAGGCGCCAATTTTGAGCACCAATCTATGACTTCCTAT 943
Query 971 TCTCAAAAACGCATATTCTGGAGGGCGCTTCGAAGTAAAGAGGGTTTGTGAGATGATGGC 1030
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 944 TCTCAAAAACGCATATTCTTGAGGGCGCTTCGAAGCAAAGAGGGTTTGTGAGATGATGGC 1003
Query 1031 AGTTTCAGACGGTACTAAGCTCTTAGCTTCGCCTATGTTTGTTGCCTT-GGATGCAAGAA 1089
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1004 AGTTTCAGACGGTACTAAGCTCTTAGCTTCGCCTATGTTTGTTGCCTTTGGATGCACGAA 1063
Query 1090 GGTCGTAAAGGAATGGTCtttttttttttGAGAAACGTATAATTAAGATAGAAA-CTGGA 1148
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | | |
Sbjct 1064 GGTCGTAAAGGAATGGTCTTTTTTTTTTTGGGAAACGTATAATTAAGATA-AAAGCAG-A 1121
Query 1149 GA-GACCATGTTCTTGTCTGTCTGAATGCTGCCATTGACTGCTTCGCTTTGGTTTTGATT 1207
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1122 GAAGACCATGTTCTTGTCTGTCTGATTGCTGCCATTGACTGCTTCGCTTTGGTTT-GATT 1180
Query 1208 CAAtttttttttCTCTCTATATCGTGGTCTCTTCTTCCTAATGCTTCTCTGTTTATTTGA 1267
||||||||||| |||||||| ||||||||| | | | |||||||||||||||||||||
Sbjct 1181 CAATTTTTTTT-CTCTCTATTTCGTGGTCT-T-CAT---AATGCTTCTCTGTTTATTTGA 1234
Query 1268 TCCTCTGCTCAAATGAAT-A-T--GA--A-CACACTTGAAAACCGGTTAA 1310
|||||||||||||||||| | | || | ||||||||||||||||||||
Sbjct 1235 TCCTCTGCTCAAATGAATGAATATGATGAACACACTTGAAAACCGGTTAA 1284
> Ahg348440 jgi|Araly1|348440|fgenesh1_pg.C_scaffold_5001832
Length=1020
Score = 346 bits (187), Expect = 3e-94
Identities = 442/557 (79%), Gaps = 50/557 (9%)
Strand=Plus/Plus
Query 104 CTCTCTCTTCCTTCAACCCTAAATCTCTTCCTTTCGGCGTCTCCAGACCTGCCTCCGTTT 163
|||| ||| | |||||||||||||| |||||| || |||||||||| || || ||||| |
Sbjct 20 CTCTTTCTGCTTTCAACCCTAAATCCCTTCCTCTCTGCGTCTCCAGGCCAGCTTCCGTCT 79
Query 164 CCCTCTTATCTCCTTCCCTCTCCTTTAAAC-TCAATTCCGA-C-TC-CGT-T-TC-CTT- 215
|| ||||| |||||||||||||||| |||| || ||||||| | || ||| | || |||
Sbjct 80 CCGTCTTACCTCCTTCCCTCTCCTTCAAACTTC-ATTCCGACCATCTCGTCTCTCTCTTC 138
Query 216 -C-TCCAT-CGCCGCCAAATGGAAC-TCTCCCG-C---T-T-C-TCGC--TTCGCCCGTA 262
| ||| | ||||| |||| | | || |||| | | | | |||| || | | |
Sbjct 139 GCTTCC-TCCGCCGTGAAAT-GCTCATCCCCCGCCGAGTATCCGTCGCGTTTTGTTAGAA 196
Query 263 ACGTTGCGAT-TA-CCTCAGAGTTCGAGGTGGAAGAAGATG--GT-TTCGCTGAC-GT-- 314
||||||| | || | ||||| ||||||||||| ||||||| | ||||||||| ||
Sbjct 197 ACGTTGC--TGTATCTTCAGATTTCGAGGTGGAGGAAGATGATATGTTCGCTGACGGTGA 254
Query 315 CG-CTC--CGCCAAAAGAGC--AA-TCTTTCTCTGCTGACCTTAAACTCTTCGTTGGTAA 368
|| || |||| |||| || || |||||| ||||||| || ||||| ||||||||
Sbjct 255 CGATTCGGCGCCTGTGGAGCGTAACTCCTTCTCTCCTGACCTCAAGCTCTTTGTTGGTAA 314
Query 369 CC-TTCCTTTCAACGTTGACAGTGCTCAGCTCGCTCAGCTCTTTGAGAGTGCCGGAAATG 427
|| ||||||| |||||||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 315 CCTTTCCTTT-AACGTTGATAGCGCTCAGCTTGCTCAGCTCTTTGAGAGCGCCGGAAATG 373
Query 428 TTGAGATGGTTGAGGTAATCTATGACAAAATTACAGGAAGAAGCAGAGGTTTTGGATTCG 487
||||||||||||||||||||||||||||| | || ||| ||||||| ||||| ||||| |
Sbjct 374 TTGAGATGGTTGAGGTAATCTATGACAAAGTGACTGGACGAAGCAGGGGTTTCGGATTTG 433
Query 488 TGACTATGTCTTCAGTTTCTGAAGTTGAGGCAGCTGCTCAGCAGTTCAATGGCTATGAGT 547
|||| |||||| | | | |||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 434 TGACAATGTCTACCGCGGCAGAAGTTGAAGCAGCAGCTCAACAGTTCAATGGCTATGAAT 493
Query 548 TGGATGGTAGACCTTTGAGAGTCAATGCTGGTCCC-CCACCACC-AAA-GAG-GGAAGAT 603
| || || ||||||||||||||||||||||| ||| || ||||| ||| ||| |||| |
Sbjct 494 TTGAAGGCAGACCTTTGAGAGTCAATGCTGG-CCCTCCTCCACCTAAAAGAGAGGAA--T 550
Query 604 GGTTTCTCCAGAGGACC 620
|| ||||||||||||
Sbjct 551 CCTT-CTCCAGAGGACC 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5