BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37240.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482716 jgi|Araly1|482716|fgenesh2_kg.4__1776__AT2G37240.1 1282 0.0
Ahg321431 jgi|Araly1|321431|fgenesh1_pm.C_scaffold_4001488 58.4 1e-07
> Ahg482716 jgi|Araly1|482716|fgenesh2_kg.4__1776__AT2G37240.1
Length=994
Score = 1282 bits (694), Expect = 0.0
Identities = 904/1001 (90%), Gaps = 32/1001 (3%)
Strand=Plus/Plus
Query 33 TGGAAGCAACAATGGCGATTGCTCTCTCGTCGTCGTCGACGATCACGTCCATTACTCTGC 92
||||||||||||||||| || |||| ||||||||| ||||||| ||| |||| |||||||
Sbjct 17 TGGAAGCAACAATGGCGGTTTCTCTGTCGTCGTCGACGACGATAACGCCCATAACTCTGC 76
Query 93 AGCCGAAGCTGAAGACGATTCATGGATTAGGGACAGTACT-TCCTGGTTATTCGGTCAAA 151
||||||| |||||||||||||||||||||||||||||| | |||| ||||||| |||||
Sbjct 77 AGCCGAATCTGAAGACGATTCATGGATTAGGGACAGTA-TCTCCTTTTTATTCGATCAAA 135
Query 152 TCTCACTTTCGTAGTGTCTCTCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGA 211
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 136 TCTCGCTTTCGTAGTGTCTCTCTCCGACGTAGCGCCGTGGTCGTGTCGGCCATTACCGGA 195
Query 212 GCTTCTTCCGGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTG-AAAGT 270
| |||| ||| ||||||| ||||||| ||| |||| || | ||||||||||| ||| |
Sbjct 196 GGAGCTTCAGGAACTGGAATTGGGAAAGATACTGCTGCTTTGTTAGATACAGTGAAAATT 255
Query 271 CTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGT 330
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 256 C-TGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCTGT 314
Query 331 TGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGC 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGC 374
Query 391 AGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAG 450
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 375 AGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTTATTGGACCGGGAAG 434
Query 451 CATCGATCAGGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCGGA 510
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 435 TATTGATCAGGCTAACACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCAGA 494
Query 511 TCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTAC 570
|||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 495 TCCAAACCACGCATCATACGAGGCGCTTGAATTTGTTTCAGGGGTTACTGTGACATTTAC 554
Query 571 ACCCAAAGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAA 630
|||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 555 CCCCAAAGCCGCTCTGAAGATATTGGAGTCTTACATGGAAGGATACCGCCAAGACTGGAA 614
Query 631 ACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGGCAACAAGGCGGAATCTTAGT 690
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 615 ACTCTCGTTTATGAAAGATACAGTAGAAAGAGGCGGCTGGCAACAAGGCGGAATCCTAGT 674
Query 691 TGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGGACAAAGAAGCCGGTGATGA 750
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 675 TGCTGGCCCTGGAAAAGATAACATCTCTTACATACGCAAGGACAAAGAAGCTGGTGATGA 734
Query 751 CCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGAAGAGTTGAAAGAATCGCAAT 810
||||||||||||||||||||| ||||||||||| |||||||| | || |||||||
Sbjct 735 CCCGCCTGTTGAAGAGATCCTAAAAGCGTGTTGCGCTTGAAG-G---AA----TCGCAAT 786
Query 811 CGAAAAATAGATATTTAAAAAACAGTAACGACACTGCTATGCCCGGATACTCAACT-AAA 869
|||||| ||||| |||||||||||||||| || |||| ||||||| |||||| || |||
Sbjct 787 CGAAAAGTAGAT-TTTAAAAAACAGTAAC-ACTGTGCTTTGCCCGG-TACTCATCTTAAA 843
Query 870 TCCATAAAACACCATTACCACAATCACAACGACCACATTTGATATATA-G---GTAGGGA 925
|||||||||||||||||||| || || |||||||||||| |||| ||| | |||||||
Sbjct 844 TCCATAAAACACCATTACCATAACCATAACGACCACATTAGATAAATATGTACGTAGGGA 903
Query 926 AAGaaaaaaaGACAAGTCGTAGACCGAAAG-TAATGATCATTGT-TTCTTGATTTTTGAT 983
||||||||| ||||||| ||||||||||| ||| | || | |||||||||||||||
Sbjct 904 AAGAAAAAA-GACAAGTGGTAGACCGAAAAATAAAAAG-AT-GCCTTCTTGATTTTTGAT 960
Query 984 GATCATTATGACTTATGAGTCGAGATCAGCGAAGGATAAGT 1024
||||||||||| | ||||||||||| ||||||||||
Sbjct 961 GATCATTATGA-----G--TCGAGATCAGCCAAGGATAAGT 994
> Ahg321431 jgi|Araly1|321431|fgenesh1_pm.C_scaffold_4001488
Length=699
Score = 58.4 bits (31), Expect = 1e-07
Identities = 38/41 (93%), Gaps = 1/41 (2%)
Strand=Plus/Minus
Query 996 TTATGAGTCGAGATCAGCGAAGGATAAGTGT-GGCCCTTGC 1035
|||||||||||||||||||||||||||||| || ||||||
Sbjct 699 TTATGAGTCGAGATCAGCGAAGGATAAGTGGCGGACCTTGC 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5