BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37250.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482717 jgi|Araly1|482717|fgenesh2_kg.4__1777__AT2G37250.1 1932 0.0
> Ahg482717 jgi|Araly1|482717|fgenesh2_kg.4__1777__AT2G37250.1
Length=1397
Score = 1932 bits (1046), Expect = 0.0
Identities = 1296/1413 (92%), Gaps = 32/1413 (2%)
Strand=Plus/Plus
Query 10 ATGTTCGTGCACGTTCTTGTTTAGGGT-AAGCTCAAAGCTCAAGCCGCTTCTATCTCTCT 68
||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTCGGGCACGTTCTTGTTTAGGGTAAAGCTCAAAGCTCAAGCCGCTTCTATCTCTCT 60
Query 69 ACATTTCTCTTTCTGCAATGGCGAGATTAGTGCGTGTGGCTAGATCCTCCTCCCTCTTTG 128
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 ACATTTCTCTTTCTGCAATGGCGAGAATAGTGCGTGTGGCTAGATCCTCCTCCTTCTTTG 120
Query 129 GCTTTGGTAACCGTTTCTACTCTACTTCAGCCGAAGCTAGCCACGCGTCGTCGCCTTCGC 188
||| ||| |||||||||||||| || || ||||||||||||||||||||||| |||||||
Sbjct 121 GCTATGGAAACCGTTTCTACTCCACCTCCGCCGAAGCTAGCCACGCGTCGTCTCCTTCGC 180
Query 189 CGTTTCTTCACGGCGGCGGAGCTAGCAGGGTTGCT-CCGAAAGATAGAAATGTTCAGTGG 247
||||||||||||||| ||||||| |||||| || | || || ||||| ||||| ||||||
Sbjct 181 CGTTTCTTCACGGCGCCGGAGCTCGCAGGGATGTTGCC-AAGGATAGGAATGTCCAGTGG 239
Query 248 GTGTTTTTGGGATGTCCTGGTGTTGGAAAAGGAACTTACGCTAGTAGACTATCAACCCTT 307
||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 240 GTGTTTTTGGGGTGTCCTGGTGTCGGAAAAGGAACTTACGCTAGTAGACTGTCGACCCTT 299
Query 308 CTCGGCGTTCCTCACATCGCCACCGGCGATCTCGTCCGTGAAGAGCTTGCATCTTCTGGA 367
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 300 CTCGGCGTTCCTCATATCGCCACCGGCGATCTCGTCCGTGAAGAGCTTGCTTCGTCTGGA 359
Query 368 CCTCTCTCTCAAAAGCTATCGGAGATTGTAAATCAGGGAAAATTGGTTTCTGATGAGATC 427
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CCTCTCTCTCAAAAGCTATCGGAGATTGTAAACCAGGGAAAATTGGTTTCTGATGAGATT 419
Query 428 ATTGTAGACTTATTGTCCAAAAGACTTGAGGCTGGTGAAGCTAGAGGTGAATCAGGGTTT 487
|| |||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct 420 ATAGTAGACCTATTGTCCAAGAGACTTGAGGCTGGTGAAGCCAAAGGTGAATCAGGGTTT 479
Query 488 ATCCTTGATGGCTTTCCTCGTACCATGAGACAAGCTGAAATACTGGGAGATGTAACTGAC 547
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 ATTCTTGATGGCTTTCCTCGTACCATGAGACAAGCTGAAATACTGGGAGATGTAACCGAC 539
Query 548 ATCGATTTGGTGGTGAATTTGAAGCTTCCTGAGGAAGTTTTGGTTGACAAATGCCTTGGA 607
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 540 ATCGATTTGGTAGTGAATTTGAAGCTACCTGAGGAAGTTTTGGTTGACAAATGCCTCGGG 599
Query 608 AGGAGAACATGTAGTCAATGTGGCAAGGGTTTTAATGTAGCTCACATCAACTTAAAGGGT 667
|||||||| ||||| |||||||| |||||||| ||| | |||||||||||||||||||||
Sbjct 600 AGGAGAACTTGTAGCCAATGTGGTAAGGGTTTCAATATTGCTCACATCAACTTAAAGGGT 659
Query 668 GAGAATGGAAGACCTGGAATTAGTATGGATCCACTTCTCCCTCCACATCAATGTATGTCA 727
|||||||||| |||||||||||| |||||||||||||||||||||| ||| || ||||||
Sbjct 660 GAGAATGGAAAACCTGGAATTAGCATGGATCCACTTCTCCCTCCACCTCACTGCATGTCA 719
Query 728 AAGCTTGTCACTCGAGCTGATGATACTGAAGAGGTGGTGAAAGCAAGGCTTCGTATATAC 787
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAGCTCATCACTCGAGCTGACGATACTGAAGAGGTGGTGAAAGCAAGGCTTCGTATATAC 779
Query 788 AATGAAACGAGCCAGCCTCTTGAAGAATACTACCGTACCAAGGGAAAGCTTATGGAGTTT 847
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 AATGAAACGAGCCAACCTCTTGAAGAATACTACCGTAGCAAGGGAAAGCTTATGGAGTTT 839
Query 848 GACTTACCTGGAGGCATCCCAGAGTCATGGCCAAGGCTATTGGAAGCTTTAAGGCTTGAC 907
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 GACTTACCTGGAGGCATCCCAGAGTCATGGCCAAGGCTACTGGAAGCTTTAAGGCTTGAC 899
Query 908 GATTACGAGGAGAAACAGTCTG-TCGCAGCATAAGTTCACTATCAAATCCCGGTATTTAA 966
|||||||| ||||| ||||||| | | ||||| |||||| | |||||||||||||||||
Sbjct 900 GATTACGAAGAGAAGCAGTCTGCT-GTGGCATA-GTTCACAAGCAAATCCCGGTATTTAA 957
Query 967 AATTCTTTGCATGTGGAATACATATGCGTAATCAATTTTGTGTTGGAAATAAAAGTAAA- 1025
| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 958 A-TTCTTTGCATGTGGAAGACATATGCCTAATCAATTTTGTGTTGGAAATAAAAGTAAAG 1016
Query 1026 AAGAAAACCTTAGATTGTTTTTCACCTCAATAGAAATAATCATACACACTTGCGCAAACT 1085
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1017 AAAAAAACCTTAGATTGTTTT-CACCTCAATAGAAATAATCATACACACTTGC--AAACT 1073
Query 1086 ATTATTTTTCCACCAGCCGGG---GAT-TTT-GGCTCCATGAGAGAAATATGATGTATCA 1140
|||||||||||| ||||| | || ||| |||||| | ||||||||||| |||||||
Sbjct 1074 ATTATTTTTCCATGAGCCGAGACCGAGGTTTCGGCTCCGTAAGAGAAATATGCTGTATCA 1133
Query 1141 TGATTGTTTGAGATTGCTAG-------TGACATTACAGGAATGTATCAATACTTCTACAC 1193
|||| ||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1134 TGATGGTTTGAGTTTGCTAGCGAGCAGTGACATTACAGGAATGTATGAATACTTCTACAC 1193
Query 1194 CACTTGTTATGCATTGAGTTTAATCGTTATGCTCTTGTGATATGttttttttGGAAAATG 1253
||||| ||||||||| |||| ||| ||||||||||||||||| ||| || ||| |||
Sbjct 1194 TACTTGATATGCATTGGGTTTGATCTTTATGCTCTTGTGATATATTTGTT--GGAGAAT- 1250
Query 1254 TGATGAATGATGATATTGCGGCTGGCCGAGCTGGCTGGTTAAAGAACTCAACCAGACAGT 1313
|||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1251 --ATGA-TGA--A-ATTGCGGCTGGCCGAGCTGGCTGGTTAAAGAACTCTACCAGACAGT 1304
Query 1314 AAAGTAAAACAGCCGCATAGATTAAACGGGAACTTATAACCAGCTCTTGACTGTCCTAGC 1373
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1305 AAAGTAAAACAGCCGCATAGATTAAATGGGAACTTATAACCAGCTCTTGACTGTCCTAGA 1364
Query 1374 ATTGGCGGTGCGGGATAGAATCGTTCCTTACAT 1406
||||||||||||||||||||| |||||||||||
Sbjct 1365 ATTGGCGGTGCGGGATAGAATTGTTCCTTACAT 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5