BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37260.1
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482718 jgi|Araly1|482718|fgenesh2_kg.4__1778__AT2G37260.1 2178 0.0
> Ahg482718 jgi|Araly1|482718|fgenesh2_kg.4__1778__AT2G37260.1
Length=1530
Score = 2178 bits (1179), Expect = 0.0
Identities = 1414/1523 (93%), Gaps = 33/1523 (2%)
Strand=Plus/Plus
Query 17 CATCCAACGTTCCCTATACTGACACGTGTATCCATCACAGTGTCGG-----CT--AAAGC 69
|||||||||||||||||| |||||||||||| ||| |||||||||| || |||||
Sbjct 1 CATCCAACGTTCCCTATAGTGACACGTGTATTCATTACAGTGTCGGCCAAACTCCAAAGC 60
Query 70 TCAAGGAACTCATACCAAGAAATACATCATCATCTCTCAATAATCACAAACCGGATCCGG 129
|||| |||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 61 TCAACGAACTCATACGAAGGGATACATCATCATCGCTCAATAATCACTAACCGGATCCGG 120
Query 130 ATCAA-TTTGGATCCATCAGATTTTCTTCGTTCCCTAACTCCTAAAAAGGAGAGATTCTT 188
|| || || ||||||||||||||||||||||| ||||||||||||||| | || | ||
Sbjct 121 AT-AAGTTCGGATCCATCAGATTTTCTTCGTT-CCTAACTCCTAAAAA-G-GA-A-TC-- 172
Query 189 CAAATCCTTATCACAACTTCAGTTTTTGCATTCACCGTCGTGAGTGTTCTACTTTTGGTC 248
| | || |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 173 C---T--TT-TCACAACTTCAGTTTTTGCATTCA-C--CGTGAGTGTTCTACTTTTGGTC 223
Query 249 AAGTAATGGAGGTGAATGATGGTGAAAGAGTGGTAATAGCAAAACCAGTTGCCTCAAGAC 308
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 224 AAGTAATGGAGGTGAAGGATGGTGAAAGAGTGGTAATAGCAAAACCGGTGGCCTCAAGGC 283
Query 309 CTTCTTCAAGTTCTGGCTTCAGGACATTCACTGAGCTTCTTACTGATTCAGTTACCGTAT 368
|||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 284 CTTCTTCAAGCCCTAGCTTCAGGACATTCACTGAGCTTCTCACTGATTCAGTTACTGTAT 343
Query 369 CTCCGCAAACGACTTGCCACGAGATTGTAGACGCTGCTATAAGACCAAAGACTTTGAGAT 428
|||| ||| ||| ||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct 344 CTCCCCAATCGAATTGTCACGCGATTGTAGACGCTGCTATAAGACCAAAGACTTTGAGGT 403
Query 429 TCAATCAGCCAGTAGCAGCTTCGGTCTCATGTCCACGGGCTGAAGTAAAAGGTATTGGAA 488
|||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 404 TCAACCAGCCAGTTGCAGCTTCGGTCTCATGTCCACGGGCTGAAGGAAATGGTATTGGAA 463
Query 489 ATGGAATGTCTTGTGATGATGATTCAGATAGCAGAAACTACGTCGTTTATAAACCGAAAG 548
||| || ||| | || |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 464 ATGAAAAGTC-T-TG-TGATGATTCAGATAGCAGAAACTATGTCGTTTATAAACCAAAAG 520
Query 549 CAAAGCTTGTCTCCAAAGCAACCGTCTCTGCATTGGCTAATATGCTTCAGGGGAATCGTC 608
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 521 CAAAGCTTGTCTCCAAAGCAACTGTCTCTGCATTGGCTAATATGCTTCAGGGGAATCGGC 580
Query 609 AACAAACTTGGAGACAAAGCGAAGCAGTATCCTATGGGAAGAGTGTGAGCCAAGGTACAC 668
|||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 581 AACAGACTTGGAGACAAACCGAAACAGTATCCTATGGGAAGAGTGTGAGCCAAGGTACAC 640
Query 669 ATCGAGCAGGTCCTAATCTAGTCCAGAAAGTTCCATCTTTTACGGAATCAGAGACATCTA 728
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 641 ATCGAGCGGGTCCTAATCTAGTCCAGAAAGTTCCATCCTTTACGGAATCAGAGACATCTA 700
Query 729 CTGGGGATAGATCTTCTGTGGATGGATACAACTGGAGGAAATACGGACAGAAGCAAGTTA 788
||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 701 TTGGTGACAGATCTTCAGTGGACGGATACAACTGGAGGAAATACGGACAGAAGCAAGTTA 760
Query 789 AAGGAAGTGAGTGTCCAAGGAGTTATTACAAATGCACACACCCGAAATGTCCGGTGAAGA 848
||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct 761 AAGGAAGTGAGTGTCCAAGAAGTTACTACAAATGCACACACCCAAAATGTCCAGTGAAGA 820
Query 849 AGAAAGTAGAGAGATCAGTGGAAGGTCAAGTTTCAGAGATTGTGTATCAAGGTGAACATA 908
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 821 AGAAAGTAGAGAGATCAGTGGAAGGTCAAGTATCAGAGATTGTGTATCAAGGTGAACATA 880
Query 909 ATCACTCAAAGCCATCTTGTCCTCTTCCACGGCGTGCTTCATCATCAATCTCTTCAGGGT 968
|||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 881 ATCATTCAAAGCCTTCTTGTCCACTTCCACGGCGCGCTTCGTCATCAATCTCTTCAGGGT 940
Query 969 TTCAAAAACCACCAAAATCGATTGCTTCTGAAGGATCAATGGGACAAGACCCTAACAATA 1028
|||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 941 TTCAGAAACCACCAAAAGGGATTGCTTCTGAAGGATCAATGGGACAAGACTCTAACAATA 1000
Query 1029 ATCTCTATTCTCCTCTATGGAACAATCAAAGCAATGACTCTACTCAAAACAGAACAGAGA 1088
|||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
Sbjct 1001 ATCTCTATTCTCCTCTTTGGAACAATCAAGGCAATGACTCTACTAAAAACAGAACAGAAA 1060
Query 1089 AGATGAGTGAAGGTTGTGTTATTACACCATTTGAGTTTGCTGTTCCAAGATCGACAAATT 1148
|||||| ||| || |||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1061 AGATGAATGAGGGATGTGTTATAACACCATTCGAGTTTGCTGTTCCAAGATCAACAAATT 1120
Query 1149 CAAATCCCGGAACTTCAGATTCCGGTTGCAAGAGTAGCCAATGTGATGAAGGAGAGCTTG 1208
|||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1121 CAAATCCCGGAACTTCGGATTCC-G--GCAAGAGTAGCCAATGTGATGAAGGAGAGCTTG 1177
Query 1209 ATGATCCAAGCAGAAGCAAAAGAAGGAAGAACGAGAAGCAATCTAGTGAAGCAGGAGTAT 1268
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ATGATCAAAGCAGAAGCAAAAGAAGGAAGAACGAGAAGCAATCTAGTGAAGCAGGAGTAT 1237
Query 1269 CGCAAGGCTCAGTGGAATCAGACAGTCTTGAAGATGGATTCAGGTGGAGAAAGTATGGAC 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CGCAAGGCTCAGTGGAATCAGACAGTCTTGAAGATGGATTCAGGTGGAGAAAGTATGGAC 1297
Query 1329 AAAAAGTGGTAGGAGGCAATGCGTATCCAAGAAGTTATTACAGATGCACAAGTGCTAATT 1388
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 AAAAAGTGGTCGGAGGCAATGCGTATCCAAGAAGTTATTACAGATGCACAAGTGCTAATT 1357
Query 1389 GCAGAGCAAGGAAACATGTTGA-ACGAGCGAGTGATGATCCAAGAGCTTTCATTACAACC 1447
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1358 GCAGAGCAAGGAAACATGTTGAGA-GAGCGAGTGATGATCCAAGAGCTTTCATTACAACC 1416
Query 1448 TACGAGGGTAAACATAATCATCATTTGCTCTTGAGCCCTCCATCTTCCTCTACTCTTCCC 1507
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1417 TACGAGGGTAAACATAATCATCATTTGCTCTTGAGCCCTCCAACTTCCTCTGCTCTTCCC 1476
Query 1508 TTTAACTCCCCACAACTTTCTAA 1530
|||||||| ||||| ||||||||
Sbjct 1477 TTTAACTCACCACAGCTTTCTAA 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68181538550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5