BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37270.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482719 jgi|Araly1|482719|fgenesh2_kg.4__1779__AT2G37270.2 1356 0.0
Ahg478543 jgi|Araly1|478543|fgenesh2_kg.3__1244__AT3G11940.2 769 0.0
> Ahg482719 jgi|Araly1|482719|fgenesh2_kg.4__1779__AT2G37270.2
Length=892
Score = 1356 bits (734), Expect = 0.0
Identities = 843/894 (94%), Gaps = 13/894 (1%)
Strand=Plus/Plus
Query 24 TGAGcttccttctcttcttcttcttcAAGCCGCGGCTAAAGATCCCTACTTCTCTCGACA 83
|||||||||| |||||||||||||||||||||| || |||||||||||||| | | | |
Sbjct 4 TGAGCTTCCTCCTCTTCTTCTTCTTCAAGCCGCAGCCAAAGATCCCTACTT-T-GCTA-A 60
Query 84 -CTTATA--GAGT--TTCAGTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACA 138
||| || || | | ||||||||||| |||||| |||||||||||| |||||||| ||
Sbjct 61 TCTTCTACTGA-TCCTCCAGTCATGGCCACCTCCGTAGAAATCGACGCCGAGATTCAGCA 119
Query 139 GCAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGTTAC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 ACAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGCTAC 179
Query 199 GGATATTAGTCTTGTGGACTACATTGGTGTTCAGCCATCGAAGCACGCAACTTTTGTTCC 258
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 TCATATTAGTCTTGTGGACTACATTGGTGTTCAGCCAGCGAAGCACGCAACTTTTGTTCC 239
Query 259 CCATACTGCT-GGACGATACTCTGTGAAGAGGTTCAGAAAGGCGCAGTGCCCAATTGTTG 317
|| |||||| ||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 240 TCACACTGCTGGGA-GATACTCTGTGAAGAGGTTCAGAAAGGCTCAATGCCCAATTGTTG 298
Query 318 AGAGGCTCACTAACTCTCTCATGATGCACGGAAGAAACAATGGTAAGAAGTTGATGGCTG 377
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 299 AGAGGCTCACTAACTCTCTCATGATGCACGGAAGGAACAACGGTAAGAAGTTGATGGCTG 358
Query 378 TCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTC 437
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 359 TCAGGATCGTCAAGCATGCCATGGAGATCATCCACCTCTTGTCTGACTTGAACCCAATTC 418
Query 438 AAGTTATCATTGATGCCATTGTTAACAGTGGTCCACGTGAAGATGCTACCAGGATTGGAT 497
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 419 AAGTTATCATTGATGCCATTGTTAACAGTGGTCCTCGTGAAGATGCTACAAGGATTGGAT 478
Query 498 CTGCTGGTGTGGTTAGGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAG 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGCTGGTGTGGTTAGGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAG 538
Query 558 CGATCTTCTTGCTTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCG 617
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAATCTTCTTGCTCACCACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCG 598
Query 618 CTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCA 658
Query 678 TCAAGAAGAAAGATGAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTCCCTTT 737
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 659 TCAAGAAGAAAGATGAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTTTCTTT 718
Query 738 CCTCTAAGTTTGCATTATATCAAA-GAGTTTTTGTGTTGTTTCCATTAGCTTTGGATATG 796
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 CCTCTAAGTTTGCATTATATCAAAAGAGTTTTTGTGTTGTTTCCATTAGCTTTGGATATG 778
Query 797 TTTCAGATGATCTCTCTATCTTTAATGAAATTTTGACGCTTATAATCGACTTGGGATCTT 856
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct 779 TTTCAGATGATCTCTCTATCTTTAATGAAGTTTTGACGCTTTTAAACGACTTGGGATCTT 838
Query 857 GATCA-TCAAACGGTTTCATATTTAAAATTATTTCATCTATATATTTTTCAGTT 909
||||| | ||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 839 GATCAATGAAATGGTTTCATATTTAAAGTTATTTCATCTATATATGTTTCAGTT 892
> Ahg478543 jgi|Araly1|478543|fgenesh2_kg.3__1244__AT3G11940.2
Length=838
Score = 769 bits (416), Expect = 0.0
Identities = 642/750 (86%), Gaps = 20/750 (3%)
Strand=Plus/Plus
Query 94 TTCAGTCATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACA-GCAGCTTACCAATG 152
||||| ||||||| || ||||||| | |||||||||||||| || || ||| || || |
Sbjct 61 TTCAGCCATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGC-GCTCACTAACG 119
Query 153 AGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGTTACGGATATTAGTCTTG 212
|||| |||||||||||||| |||| || ||| |||||| |||| || || || |||||||
Sbjct 120 AGGTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTG 179
Query 213 TGGACTACATTGGTGTTCAGCCATCGAAGCACGCAACTTTTGTTCCCCATACTGCTGGAC 272
| ||||||||||| |||||| || | || || || || ||||||||||| || ||||||
Sbjct 180 TTGACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAA 239
Query 273 GATACTCTGTGAAGAGGTTCAGAAAGGCGCAGTGCCCAATTGTTGAGAGGCTCACTAACT 332
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 240 GATACTCTGTGAAGAGATTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACT 299
Query 333 CTCTCATGATGCACGGAAGAAACAATGGTAAGAAGTTGATGGCTGTCAGGATCGTCAAGC 392
||||||||||||| || || ||||| |||||||| |||||||| || |||||||||||||
Sbjct 300 CTCTCATGATGCATGGGAGGAACAACGGTAAGAAATTGATGGCAGTGAGGATCGTCAAGC 359
Query 393 ATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATG 452
|||||||||||||||||||||||||||||||||||||||| || || || |||||||| |
Sbjct 360 ATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATCCAGGTCATCATTGACG 419
Query 453 CCATTGTTAACAGTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTA 512
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 420 CCATTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTA 479
Query 513 GGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAGCGATCTTCTTGCTTA 572
|||| || ||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 480 GGAGACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAAGCTATCTTCTTGATTA 539
Query 573 CAACTGGTGCACGTGAAGCTGCCTTT-AGAAACATCAAGACAATCGCTGAGTGCCTTGCT 631
| |||||||| ||||||||||| ||| |||||||||||||| || |||||||||||||||
Sbjct 540 CCACTGGTGCTCGTGAAGCTGC-TTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCT 598
Query 632 GATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCATCAAGAAGAAAGAT 691
|||||| | ||||| || || ||||| ||||||||||||||||||||||||||||| |||
Sbjct 599 GATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGAT 658
Query 692 GAGATTGAGAGAGTTGCTAAGGCCAATCGTTAAGGGATCTCCCTTT--CCTCTAAGT-TT 748
|||||||| |||||||| ||||||||||||||||| || | ||||| ||| | || ||
Sbjct 659 GAGATTGAAAGAGTTGCCAAGGCCAATCGTTAAGG-ATTTTCCTTTTGCCT-TGAGGGTT 716
Query 749 GCATTAT-ATCAAAGAGTTTT-TGTGTTGT-TTCCATT-AGCTTTGGA-TATGT-T-TCA 801
|| | | ||||| |||||| ||| || | ||| ||| || || | | ||||| | |||
Sbjct 717 ACAATCTTATCAATGAGTTTAATGTTTTATCTTC-ATTTAGATT-GAAATATGTATCTCA 774
Query 802 GATGATCT-CTCTATC-TTTAATGAAATTT 829
|||| | | |||| | ||| ||||| |||
Sbjct 775 GATGTTTTGCTCTTTTGTTTTATGAAGTTT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5