BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37290.2
Length=3322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482721 jgi|Araly1|482721|fgenesh2_kg.4__1781__AT2G37290.1 1967 0.0
> Ahg482721 jgi|Araly1|482721|fgenesh2_kg.4__1781__AT2G37290.1
Length=2762
Score = 1967 bits (1065), Expect = 0.0
Identities = 1150/1192 (96%), Gaps = 2/1192 (0%)
Strand=Plus/Plus
Query 1851 GTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTA 1910
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1396 GTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGACCATGGTTCCTA 1455
Query 1911 TCTATTTTTGTCAACATTATTCCTTGGGAATGCGTTCTGCGGATGTGGGATGTGCTTCTC 1970
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TCTATTTTTGTGAACATTATTCCTTGGGAATGCGTTCTGCGGATGTGGGATGTGCTTCTC 1515
Query 1971 TTTGAAGGAAACCGTGTAGTGTTGTTCAGAACAGCATTTGCTATAATGGAACTATATGGT 2030
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1516 TTTGAAGGAAACCGTGTAGTGTTGTTCCGAACAGCATTTGCTATAATGGAACTATATGGT 1575
Query 2031 CCTGCAATTGTTGCAACAAAAGATGCAGGAGATGCTATTACTTCACTACAAAGTCTTGCT 2090
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1576 CCTGCAATTGTTGCCACAAAAGATGCAGGAGATGCTATTACTTCGCTACAAAGTCTTGCT 1635
Query 2091 AGTTCAACATTTGATAGTAGTCAACTTGTTTTGACTGCATGCATGGGTTATATATCGACA 2150
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1636 AGTTCAACATTTGATAGTAGTCAACTTGTTTTGACCGCATGCATGGGTTATATATCGACA 1695
Query 2151 AATGAAGCTAGACTAGAGGAGCTGAGGAAAATACATAGACCCGCGGTACTAGAGATTGTC 2210
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1696 AATGAAGCTAGACTAGAGGAGCTGAGGAAAATACATAGACCGGCGGTACTAGAGATTGTC 1755
Query 2211 GAGGAACGAATACAAAAGGGTCGAGTATGGAAGGACAAAAAGGGATTGGCTTCTAAGTTA 2270
|||||| |||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1756 GAGGAAAGAATACAAAAAGGTCGAGTCTGGAAGGATAAAAAAGGATTGGCTTCTAAGTTA 1815
Query 2271 TATAGCTTTAAACATGAAGGTTCTATCTTAGATCATGAACAAAAGTCTACTCAAAGGAAT 2330
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1816 TATAGCTTTAAACATGAAGGCTCTATCTTAGATCATGAACAAAAGTCTACTCAAAGAAAT 1875
Query 2331 GATGGTGAGAATCAAGATGATGATGATGAATCTTGTTCGCCTTTTCTGAATCTTGATGGT 2390
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1876 GATGGTGAGGATCCAGATGATGATGATGAATCTTGTTCGCCTTCTCTGAATCTGGATGGT 1935
Query 2391 GCAAATGTTGATTCCGAAGTAGATTCTTTACCAGATCTTCAAGAACAGGTGGTATGGATG 2450
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1936 GCTAATGTTGATTCTGAAGTAGATTCTTTACCAGATCTTCAAGAGCAGGTGGTATGGATG 1995
Query 2451 AAGGTTGAACTATGCAGACTGTTGGAGGAGAAAAGATCAGCGGTGATGAGAGCTGAGGAG 2510
|||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 1996 AAGGTTGAACTATGTAGATTGTTGGAGGAGAAAAGATCAGCTGTAATGAGAGCTGAGGAG 2055
Query 2511 CTGGAGATAGCTTTGATGGAGATGGTCAAAGAAGATAACAGACTGGAATTAAGTGCACGG 2570
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2056 CTGGAGATAGCTTTGATGGAGATGGTCAAAGAAGATAACAGATTGGAATTAAGTGCACGG 2115
Query 2571 ATTGAACAACTGGAAAGGGATGTAAGAGAACTAAAGCAAGTCCTTTCTGACAAGAAAGAA 2630
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2116 ATTGAACAACTGGAAAGGGAAGTAAGAGAACTAAAGCAAGTCCTTTCTGATAAGAAAGAA 2175
Query 2631 CAAGAAACAGCAATGCTTCAGGTGTTGATGAAAGTTGAGCAAGACCAAAAGCTAACAGAA 2690
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2176 CAAGAAACAGCAATGCTTCAGGTCTTGATGAAAGTTGAGCAAGACCAAAAGCTAACAGAA 2235
Query 2691 GATGCCCGGATAAATGCAGAGCAGGATGCAGCTGCACAAAGATATGCAGTACATGTGCTT 2750
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 2236 GATGCCCGGATAAGTGCAGAACAAGATGCAGCTGCACAAAGATATGCAGTACATGTGCTT 2295
Query 2751 CAGGAAAAGAATGAGAAGCTTGTGACTCAACTCGCTCAAATGGAGAAGAAACTAGTTACA 2810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2296 CAGGAAAAGAATGAGAAGCTTGTGACTCAACTCGCTCAAATGGAGAAGAAACTAGTTACA 2355
Query 2811 GCAGAAACAACACTCGAAGCTACTTTGCAATATGAATCCGGTCAAAATAAAGCACTATCA 2870
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2356 GCAGAAACAACACTCGAAGCAACTTTGCAATATGAATCAGGTCAAAATAAAGCACTATCA 2415
Query 2871 TCATCTCCAAGGTTTACTCGTACTACA-ACGGAGAGTCCTAAAAAGAAGACAGGCTTCCT 2929
||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 2416 TCATCTCCAAGGTTTACTCGTACTACACA-GGAGAGCCCTAAAAAGAAGACAGGCTTCCT 2474
Query 2930 ATCATTTGGGCTTGGCTGGCGCGACAGGAACAAGGCAAAACAAACAGAGGAATCAAATGT 2989
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2475 ATCATTTGGGCTTGGCTGGCGCGACAGGAACAAGGCAAAGCAAACGGATGAATCAAATGT 2534
Query 2990 TGATAATACTAGTAATGCAGCATCTGAAGCCAAATCTCCATCAAAAGAAAGC 3041
||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2535 TGATAATACTAGTAATGCATCATCTGAATCCAAATCTCCATCAAAAGAAAGC 2586
Score = 1794 bits (971), Expect = 0.0
Identities = 1295/1437 (90%), Gaps = 79/1437 (5%)
Strand=Plus/Plus
Query 351 ATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGGGACGCCTATGGA 410
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1 ATGTTGTTATCTTTGGTGAGCAAGCGCTCACTGGAGGTTGATTCCAGGGACGCTTATGGA 60
Query 411 TTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGAATACCTTAGCATCTATACAGAG 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGAATACCTTAGCATCTATACAGAA 120
Query 471 GAAGAGACAGAGAGGGCAGAGAAATGGAAAAACTTTCTTGACCGACAAGAAGACAGAACC 530
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 121 GAAGAGACAGAGAGGGCAGAGAAATGGAAAAACTTTCTTGACCGACAAGAAAACAGAGCC 180
Query 531 GCTGAACCTTGTTCCTCAGATGAGGAGTTTCAGGATACATTTCAGGCTGATGGTTTGGAA 590
|||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 GCTGAACCTTGTTCCTCAGAAGAGGAGTTTCAGGATTCATTCCAGGCTGATGGTTTGGAA 240
Query 591 TCTGGAGAGGATAGTGATTCAGAATCAGAGGAGGGTTCAAGAAATGGGAAACATGAAGAT 650
||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||
Sbjct 241 TCTGGAGAGGAGAGTGA-T-----TCAGAGGAGGGTTCAAGAAACGGGAAACTTGAAGAT 294
Query 651 TGTGAACTTAGTGGTACAAGTG-A--GCAGCAACTTGAACAAGATAGGACTGAAACAGTT 707
|||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |
Sbjct 295 TGTGAACTTAGTGGTACAAGAGTACTGCAGCATCTTGAACAAGATAGGACTGAAACAGCT 354
Query 708 GGTGATGTTTCAAAAGAGACAGAACCAGCCGAGGAGGCACTGGTTCTT-----G-A-C-- 758
||||||||||||||||||| |||| ||||||||||||| | ||||||| | | |
Sbjct 355 GGTGATGTTTCAAAAGAGAGAGAAACAGCCGAGGAGGCGCAGGTTCTTGACGAGCACCAA 414
Query 759 ------------AAGAGTCTTAGAAGCGACACAGAATCTGTAAAAGATGAGGAGGAGGAG 806
|||||||||||||| ||||||||| |||||||||| ||||| || |||
Sbjct 415 TATTTGAGGGAGAAGAGTCTTAGAAGAGACACAGAACCTGTAAAAGACGAGGATGAAGAG 474
Query 807 AAATTTGAATCTGATAAGGATAAAGAATCATCTGTCGG-AAGTGAAAGTGAATCGGATGA 865
| |||||||||||| ||||||||||||||||| || || ||||||||||||||| ||| |
Sbjct 475 ATATTTGAATCTGACAAGGATAAAGAATCATCAGT-GGAAAGTGAAAGTGAATCTGATAA 533
Query 866 AGAACAACAATCTCAAGCAGTAAAAGAACCTGTGGATCATGTACACATTCAACAAGAAGA 925
|||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 534 AGAACAACAATCTCAAGCAGTAAAAGAACCTGTGGATCATGT--ACA-T----------- 579
Query 926 AAAGCTTGTGGCAGAAGAAGATAAATGTGAATCGGGACATGAAGAAAAAGCACAAAAAGA 985
||||||||||||||||||||||||||| |||||||| || |||||| |||||||
Sbjct 580 ----CTTGTGGCAGAAGAAGATAAATGTGAACCGGGACAT---GATAAAGCAGAAAAAGA 632
Query 986 AACCAAGGCTCCTCGTTCAGTTATAGAATGGGCTCATATTAGACCTTGTCTTGCGTCCAT 1045
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 633 AACCAAGG---CTCGTTCAGTTATAGAATGGGCTCATATTCGACCTTGTCTTGCGTCCAT 689
Query 1046 AGAGGATATGATGTGTTCTCGTGTTAAGAACGTAAAGTCTACT-AAAAATGGTCAGAAGA 1104
||||||||||||||| ||||||||||||||||||||| || | |||||| ||||||||
Sbjct 690 AGAGGATATGATGTGCGCTCGTGTTAAGAACGTAAAGTATA-TGAAAAATAATCAGAAGA 748
Query 1105 ATATAGTAGATGACCATGCTTCATCGATAAAAGAATCGCTGTCTTCCATTGAAGAATCTG 1164
|||||||| ||||||| |||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 749 CTATAGTAGGTGACCATATTTCACCGAGAAAAGAATCGCTGCCTTCCATTGAAGAATCTG 808
Query 1165 -----------GG-GAAAATGACCGTGACAGTGAGACTTCCACAAGTAGATCCCATTCGA 1212
|| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 809 AACAAAACTCTGGAGAAAATGACCGTGATAGTGAGACTTCCACGAGTAGATCCCATTCGA 868
Query 1213 TAAAGGAAGAAAACGAAGCTCAGGGTAGTGTTTCTCCAGAGCCATTTTTCCCTTGGTATG 1272
| |||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 869 T----GAAG-GAA-GAA---CAGGGTAGTGTTTCTCCAGAGCCATTTTTCCCTTGGTATG 919
Query 1273 AAGAACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGGTTTGGC 1332
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 920 AAGAACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTCAGAGGGGAGGTTTGGC 979
Query 1333 AAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTATCAGGATTTGTTGGCTC 1392
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AAGCCTTTGTAGGTGTAAAGGCAAGAAGAGTTGAGAGATACTATCAGGATTTGTTGGCTC 1039
Query 1393 AAATAACTAACTCTGATGAAAACTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTG 1452
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1040 AGATAACTAACTCTGATGAAAGCTCATCTGATGTCCAAAGAAAGTGGAAAAAACAAATTG 1099
Query 1453 AAAAGGATATACCTCGGACATTCCCAGGCCATCCTGCTTTGAATGAAAATGGTCGAGATT 1512
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 1100 AAAAGGATATACCTCGGACATTCCCAGGCCACCCTGCTCTGAATGAAAATGGTCGCGATT 1159
Query 1513 CGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGG 1572
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1160 CGTTAAGGCGGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGATACTGTCAGG 1219
Query 1573 CTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTGGA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTGGA 1279
Query 1633 CTTTGGTTGGGATAATTGATGATTATTTTGATGGCTACTATACTGAAGAAATGATAGAAT 1692
||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1280 CTTTGGTTGGGATTATTGATGACTATTTTGATGGCTACTATACAGAAGAGATGATAGAAT 1339
Query 1693 CTCAGGTTGATCAACTAGTCTTTGAAGAGTTGATGCGCGAAAGATTTCCAAAGCTCG 1749
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1340 CTCAGGTTGATCAACTAGTCTTTGAAGAGTTGATGCGAGAAAGATTTCCAAAGCTCG 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125399703035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5