BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G37300.2

Length=1025
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482722 jgi|Araly1|482722|fgenesh2_kg.4__1782__AT2G37300.1         464    5e-130


> Ahg482722 jgi|Araly1|482722|fgenesh2_kg.4__1782__AT2G37300.1
Length=466

 Score =  464 bits (251),  Expect = 5e-130
 Identities = 394/457 (86%), Gaps = 34/457 (7%)
 Strand=Plus/Plus

Query  340  GCAGAGCTTATTACTAGAAAGATGGAAGAGTTGGAGCGTAATCTGAAAGAAGAGATCAGA  399
            |||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||
Sbjct  1    GCAGAGCTTATTACAAGAAAGATGGAAGAGCTGGAGCGTAATCTGAAAGAAGAAATTAGA  60

Query  400  TTGAGGGAAAAAGCAGAGAAGAGACTAAAGCTTCTGATGAAGAAA-CTTGAATTCATTAA  458
            || ||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||
Sbjct  61   TTAAGGGAAAAAGCAGAGAAGAGACTAAAGTTTCTGATGAA-AAAGCTTGAATCCATTAA  119

Query  459  AGGGTCACGCAGTTCGGAGGGATCAAGTTCATCTGAAGTTTCTTGCATATCATCGGTTTG  518
            |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct  120  AGGGTCACGCAGTTCGGAGGGATCAAATTCATCTGAAGTTTCTTGTATATCATCAGTTTG  179

Query  519  CACTTCAGCCTCCAAGGAAGAAGAAGAAGAAACTCATGATAGTGGAGCCGTGGATGAAG-  577
            ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| 
Sbjct  180  CACTTCAGCCTCCAAGGAAGAAGAAGAAGAAACTCATGAAAATGGAGCCGTGGATGAAGA  239

Query  578  GAAAAACTGACCATGCAACTGAAAATGTTGCCTCCACGGAAGAAGCTGATTCAAGTTCAA  637
            ||||| |||| |||||||||| ||||| ||| |||| | |||||||||||||||  ||||
Sbjct  240  GAAAA-CTGATCATGCAACTGCAAATGCTGCTTCCATGAAAGAAGCTGATTCAAAATCAA  298

Query  638  AGCTCAAAGATGTTTCTTCTGGTGAAGCAAGTGTTGTTGCTTCAACCTCAAGTCATAAAG  697
            |||||||||||||| ||||     || |           || |||      ||||| |||
Sbjct  299  AGCTCAAAGATGTTGCTTC-----AA-C-----------CT-CAA------GTCATGAAG  334

Query  698  AAGAATCCCAGTTTGGTAATGAGTTTTCTTGGTACTCAGATGCAACTTAAGAGTTCAAGA  757
            ||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  335  AAGAATCACAGGCTGGTAATGAGTTTTCTTGGTACTCAGATGCAACTTAAGAGTTGAAGA  394

Query  758  -ATCAAGAATAT-CAATCTTTT-ATTCCCTAAACAAC  791
             | ||||||| | || | || | || |||||||||||
Sbjct  395  CA-CAAGAATGTTCA-T-TTCTCATCCCCTAAACAAC  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38122917000


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5