BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37310.1
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934382 jgi|Araly1|934382|scaffold_402370.1 3103 0.0
Ahg931925 jgi|Araly1|931925|scaffold_304382.1 73.1 8e-12
> Ahg934382 jgi|Araly1|934382|scaffold_402370.1
Length=2050
Score = 3103 bits (1680), Expect = 0.0
Identities = 1878/1976 (95%), Gaps = 4/1976 (0%)
Strand=Plus/Plus
Query 1 ATGAATGAAGTTGGGATTCGAAATTCAACGAGCCTTGCAAGGCTTGCTAAACAAGGCGGC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 17 ATGAATGAAGTTGGGATTCGAAATTCAACGAGCCTTGCAAGGCTTGCTAAACAAAGCGGC 76
Query 61 GGTCGACGGCGGTGCGTACGGTCACCTCATCCAGCACTTCACCCGTCACCGACTTCCTCT 120
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 77 GGTCGACGGCGGCGCGTATGGTCACCTCATCCAGCACTTCACCCGTCACCGACTTCCTCT 136
Query 121 CCACGTGCTTCAGCTTCACGCGCGTATTGTCGTCTTCTCCATCAAGCCGGACAACTTCCT 180
||||| |||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 137 CCACGCGCTTCAGCTTCACGCGCGCATTGTCGTCTTCTCCATCGCGCCTGACAACTTCCT 196
Query 181 CGCGTCAAAGCTCATCAGTTTTTACACTAGGCAGGATCGTTTCCGCCAAGCACTCCATGT 240
||| |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct 197 CGCTTCAAAGCTCATCAGTTTTTACACTAGGCAGAATCGCTTCCACCAAGCACTCCATGT 256
Query 241 GTTCGACGAAATTACCGTTAGAAATGCCTTCTCTTACAACGCACTTCTCATCGCTTATAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 257 GTTCGACGAAATTACCGTTAGAAATGCCTTCTCTTACAACGCACTTCTCATCGCGTATAC 316
Query 301 TTCGCGTGAGATGTATTTCGATGCTTTCTCGTTGTTCTTGTCCTGGATTGGATCCTCTTG 360
|||||||| |||||||| |||||||| || ||||| |||||||||||||| ||||||||
Sbjct 317 GTCGCGTGAAATGTATTTTGATGCTTTTTCTTTGTTTTTGTCCTGGATTGGGTCCTCTTG 376
Query 361 TTACTCTTCCGATGCTGCCAGACCGGATTCTATTAGCATCTCTTGTGTGTTGAAGGCACT 420
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 377 TTACTCTTCCGGTGCTGCCAGACCAGATTCTATTAGCATCTCTTGTGTGTTGAAGGCACT 436
Query 421 GTCAGGCTGTGATGATTTCTGGTTGGGTTCATTGGCTCGACAAGTTCATGGGTTTGTTAT 480
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 437 CTCAGGTTGTGATGATTTCTGGTTGGGTTCATTGGCTCGGCAAGTTCATGGGTTTGTTAT 496
Query 481 ACGAGGTGGATTTGATTCAGATGTCTTCGTGGGCAATGGGA-TGATAACGTACTATACAA 539
|| |||||| |||||||| |||||||||||||||||| ||| |||| |||||||||||||
Sbjct 497 ACAAGGTGGGTTTGATTCTGATGTCTTCGTGGGCAAT-GGACTGATCACGTACTATACAA 555
Query 540 AGTGTGATAACATCGAGTCTGCGAGGAAAGTGTTTGATGAAATGTCTGAGAGAGATGTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 556 AGTGTGATAACATCGAGTCTGCGAGGAAAGTGTTTGATGAAATGTCTGACAGAGATGTTG 615
Query 600 TTTCGTGGAATTCTATGATTTCAGGGTATTCTCAAAGTGGGTCTTTTGAGGACTGTAAGA 659
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 616 TTTCGTGGAACTCTATGATTTCCGGGTATTCTCAAAGTGGGTCTTTTGAGGATTGTAAGA 675
Query 660 AGATGTATAAAGCGATGTTAGCTTGCTCTGATTTTAAGCCTAATGGAGTCACTGTGATAA 719
|| |||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||
Sbjct 676 AGTTGTATAAAGCGATGTTAGGTTGCTCAGATTTTAAGCCTAACGAAGTCACTGTGATAA 735
Query 720 GCGTCTTCCAGGCGTGCGGACAGTCAAGCGATCTTATTTTCGGGTTGGAAGTTCACAAGA 779
||||||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 736 GCGTCTTGCAGGCCTGCGGACAGTCAAGCGATCTTGTTTTCGGGATGGAAGTTCACAAGC 795
Query 780 AGATGATTGAAAATCATATTCAGATGGATTTATCCTTGTGTAATGCTGTGATTGGTTTTT 839
|||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 796 AGATGATTGAGAATCATATTCAGATGGATTTATCCCTGTGTAACGCTGTGATTGGTTTTT 855
Query 840 ATGCTAAATGTGGTAGCTTGGATTATGCAAGAGCATTGTTTGATGAGATGAGTGAGAAAG 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 856 ATGCTAAATGTGGTAGCTTGGATTATGCAAGAGCTTTGTTTGATGAGATGAGTGAGAAAG 915
Query 900 ATTCGGTTACATACGGAGCTATAATTTCTGGATATATGGCTCATGGTCTTGTCAAGGAAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 ATTCGGTTACATACGGAGCTATAATTTCTGGATATATGGCTCATGGTCTTGTCAAGGAAG 975
Query 960 CAATGGCTTTGTTTAGTGAAATGGAAAGCATTGGTCTGAGTACGTGGAATGCTATGATTT 1019
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 976 CAATGGCTTTATTTAGTGAAATGGAAAGCATTGGTCTGAGTACGTGGAATGCTGTGATTT 1035
Query 1020 CGGGTCTTATGCAGAATAACCATCATGAGGAGGTTATAAACTCATTTAGGGAGATGATAA 1079
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CAGGTCTTATGCAGAATAACCATCATGAGGAGGTTATAAACTCATTTAGGGAGATGATAA 1095
Query 1080 GATGTGGCTCGAGGCCAAACACGGTGACCCTTTCGAGCCTTCTTCCTTCGTTGACATATA 1139
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1096 GATGTGGCTCTAGGCCAAACACGGTGACCCTTTCGAGCCTTCTTCCGTCGTTGACATATA 1155
Query 1140 GTTCAAATCTGAAAGGGGGTAAGGAAATCCACGCTTTTGCCATCCGTAACGGCGCTGACA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1156 GTTCAAATCTGAAAGGGGGTAAGGAAATCCACGCTTTTGCCATCCGTAACGGCTCTGACA 1215
Query 1200 ACAATATATATGTCACCACTTCCATTATAGATAACTATGCTAAATTAGGATTTCTGCTAG 1259
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1216 ACAATATATATGTCACCACCTCCATTATAGATAACTATGCCAAATTAGGATTTCTGCTAG 1275
Query 1260 GAGCTCAAAGAGTTTTTGATAACTGTAAAGATAGGAGCTTGATTGCTTGGACGGCAATTA 1319
|||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||||||
Sbjct 1276 GAGCTCAAAGGGTTTTTGATAACTGTAAAGACAGGAGCTTGATTGTTTGGACCGCAATTA 1335
Query 1320 TAACAGCATATGCTGTTCATGGGGACTCTGATTCTGCTTGTAGTCTTTTTGACCAAATGC 1379
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 TAACGGCATATGCTGTTCATGGGGACTCTGATTCTGCTTGTAGTCTTTTTGACCAAATGC 1395
Query 1380 AGTGTCTTGGAACTAAGCCAGACGATGTCACACTAACAGCTGTTCTTTCAGCTTTTGCGC 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1396 AGTGTCTTGGAACTAAGCCAGACAATGTCACACTAACAGCTGTTCTTTCAGCTTTTGCGC 1455
Query 1440 ACTCAGGG-GATTCAGACATGGCGCAGCATATATTTGATTCTATGTTAACTAAGTATGAC 1498
|||| ||| |||| || | |||||| |||||||||||||||||||||||||||||| ||
Sbjct 1456 ACTC-GGGAGATTTGGATAAGGCGCAACATATATTTGATTCTATGTTAACTAAGTATAAC 1514
Query 1499 ATTGAGCCTGGAGTTGAGCACTATGCTTGTATGGTAAGTGTTCTTAGCCGGGCTGGAAAA 1558
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1515 ATTGAGCCTGGAGTGGAGCACTATGCTTGTATGGTTAGTGTTCTTAGCCGGGCTGGAAAA 1574
Query 1559 CTTTCGGATGCAATGGAATTCATTTCTAAGATGCCAATTGATCCAATTGCTAAAGTTTGG 1618
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1575 CTTTCGAATGCAATGGAATTCATTTCTAAGATGCCAATTGAACCAATTGCTAAAGTTTGG 1634
Query 1619 GGTGCATTGTTGAACGGAGCCTCTGTTCTTGGCGATTTAGAGATTGCTAGGTTCGCTTGT 1678
|| |||||||||||||| || |||||||| || ||| | ||||| |||||||||||||||
Sbjct 1635 GGCGCATTGTTGAACGGGGCTTCTGTTCTCGGTGATGTGGAGATCGCTAGGTTCGCTTGT 1694
Query 1679 GATCGGTTGTTTGAGATGGAACCTGAAAACACAGGGAACTACACTATCATGGCGAATTTG 1738
||||| ||||| || ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1695 GATCGCTTGTTCGAAATGGAGCCTGAAAATACAGGGAACTACACTATCATGGCGAATTTG 1754
Query 1739 TACACTCAAGCAGGGAGATGGGAAGAAGCTGAAATGGTAAGGAATAAGATGAAAAGAATC 1798
|| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct 1755 TATACTCAAGCAGGGAGATGGGAAGAAGCTGAAGTTGTAAGGGATAAGATGAAAAGAATT 1814
Query 1799 GGATTGAAGAAAATCCCCGGCACCAGCTGGATCGAAACTGAGAAAGGATTACGTAGTTTC 1858
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1815 GGATTGAAGAAAATCCCCGGGACCAGCTGGATCGAAACTGATAAAGGATTACGTAGTTTC 1874
Query 1859 ATAGCGAAAGACAGTTCGTGTGAGAGAAGCAAAGAGATGTATGAGATAATAGAGGGTTTG 1918
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1875 ATAGCGAAAGACAGTTCGTGTGAGAGAAGCAAAGAGATGTATGATATAATAGAGGGTTTG 1934
Query 1919 GTTGAGTCAATGAGCGACAAAGAGTATATCAGGAAACAAGAGCTTGATGAAGCTTA 1974
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1935 GTTGAGTCAATGTGCGACAAAGAGTATATCATGAAACAAGAGCTTGATGAAGCTTA 1990
Score = 62.1 bits (33), Expect = 2e-08
Identities = 50/57 (88%), Gaps = 5/57 (9%)
Strand=Plus/Plus
Query 2001 GCATTGTCTTGCCATGGACTTCTCAAGGAGTTACTACTATGGGATGATTTGtttttt 2057
||||| ||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1992 GCATTTTCTTGCCATGGACTTCTCAAGGAGTTACTG-T--G--ATGATTTGTTTTTT 2043
> Ahg931925 jgi|Araly1|931925|scaffold_304382.1
Length=1646
Score = 73.1 bits (39), Expect = 8e-12
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 566 AAAGTGTTTGATGAAATGTCTGAGAGAGATGTTGTTTCGTGGAAT 610
||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 514 AAAGTGTTTGATGAAATGTCTGAGAGAGATGTTATATCGTGGAAT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85855412230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5