BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37320.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482724 jgi|Araly1|482724|fgenesh2_kg.4__1784__AT2G37320.1 2314 0.0
> Ahg482724 jgi|Araly1|482724|fgenesh2_kg.4__1784__AT2G37320.1
Length=1556
Score = 2314 bits (1253), Expect = 0.0
Identities = 1467/1570 (93%), Gaps = 16/1570 (1%)
Strand=Plus/Plus
Query 5 TTTTTAGTTTCATGTCTTGTCTGAGAAATTATTATTGTCGAGCTTTC-GGTTATAAACAG 63
|||| |||||||||||||||||||| |||||||||||||||||| || || |||| ||
Sbjct 1 TTTTGAGTTTCATGTCTTGTCTGAGTAATTATTATTGTCGAGCTGTCAGG-TATATTCAA 59
Query 64 TCTCGATCTTGCTACAGTCGATCACTGAATCGTGAAATAGCTAACGAGTCATCTGAAGTT 123
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 60 TCTCGGTCTTGCTACAGTCGATCACTGAATCGTGATATAGCTAACGAATCATCTGACGTT 119
Query 124 GAGAGACGAGCTCGTTCTCTGAGAGTTTTGGATATCATATCTTCGAAATCTGGTGGAGTT 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 GAGAGACGAGCTCGTTCTCTGAGAGTTTTAGATATCATATCTTCGAAATCTGGTGGAGTT 179
Query 184 TCGAATCGTCAGGACCATTTTGGTTTCGTTCAGGAATTTCGACAAACAGATTCGTGGCGA 243
|||||||| ||| | ||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 180 TCGAATCGACAGAATCATTTTGGTTTCGTTCAGGAATTTCTACAAACAGATTCGAGGCAA 239
Query 244 TTCAGAGGTCAGGCAATTTCCGAGGATTTTGATCTCTCAAGAACCAAAAATGGAGTTTCA 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCAGAGGTCAAGCAATTTCCGAGGATTTTGATCTCTCAAGAACCAAAAATGGAGTTTCA 299
Query 304 AGCGTGCTCGAAGAAGTTATGCTGGAGGATTCTTCAAGCTCTGTCAAGCGAGATGGATGG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCGTGCTCGAAGAAGTTATGCTGGAGGATTCTTCAAGCTCTGTCAAGCGAGATGGATGG 359
Query 364 AGTTTCGATGCTTATGGTTTATCATCCGCCGTGAGATCTTGTGGGTTGAATCGAGACTTT 423
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 360 AGTTTCGATGCTTATGGTTTATCATCCGCCGTGAGATCCTGTGGGTCGAATCGAGACTTT 419
Query 424 AGAACCGGTTCTGGGTTTCATTGTTTAGCGTTGAAAGGTGGGTTTATCTCAGATGTCTAC 483
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 420 AGAACCGGTTCGGGGTTTCATTGCTTAGCATTGAAAGGTGGGTTTATCTCAGATGTCTAC 479
Query 484 TTAGGAAGTTCTCTGGTCGTTTTGTACAGAGATTCTGGTGAAGTAGAGAATGCATATAAA 543
||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 480 TTAGGAAGTTCCCTGGTCGTTTTGTACCGAGATTCTGGTGAAGTAGAGAATGCACATAAA 539
Query 544 GTGTTTGAAGAAATGCCTGAGAGGAATGTGGTTTCATGGACGGCTATGATTTCAGGGTTT 603
||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 540 GTGTTTGCTGAAATGCCTGACAAGAACGTGGTTTCATGGACGGCTATGATTTCAGGGTTT 599
Query 604 GCGCAAGAATGGCGAGTTGATATCTGCTTGAAGCTTTATTCAAAGATGAGAAAGTCAACC 663
||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||
Sbjct 600 GCGCAAGAATGGCGAGTTGATATCTGCATGAAGCTGTATTCAGAGATGAGAAATTCAACC 659
Query 664 TCTGATCCGAATGATTACACATTCACGGCTCTCTTGAGCGCTTGCACGGGAAGCGGAGCC 723
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTGATCCGAATGATTATACTTTCACGGCTCTCTTGAGCGCTTGCACGGGAAGCGGAGCC 719
Query 724 CTAGGGCAAGGAAGAAGTGTTCATTGTCAGACACTCCACATGGGATTGAAGTCGTATCTA 783
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 CTAGGGCAAGGAAGAAGCGTTCATTGTCAGACACTCCAAATGGGATTGAAGTCGTATCTT 779
Query 784 CATATCTCAAACTCTCTCATCTCGATGTACTGCAAATGCGGTGATTTGAAGGATGCTTTT 843
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 780 CATATCTCAAACTCTCTCATCTCGATGTACTGCAAATGTGGCGATTTGAAGGATGCTTTT 839
Query 844 CGTATCTTTGACCAGTTTTCAAACAAAGACGTTGTTTCTTGGAACTCTATGATTGCTGGT 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 CGTATCTTTGACCAGTTTTCAAACAAAGACGTTGTTTCCTGGAACTCTATGATTGCTGGT 899
Query 904 TACGCGCAGCACGGCCTTGCAATGCAAGCAATCGAGCTCTTTGAATTAATGATGCCTAAA 963
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 900 TACGCGCAGTACGGCCTTGCAACGCAAGCAATCGAGCTCTTTGAATTAATGATGCCCAAA 959
Query 964 AGCGGAACAAAGCCAGATGCAATCACATATCTAGGAGTTTTGTCATCGTGTAGACACGCA 1023
||||||| |||||| ||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 960 AGCGGAATAAAGCCGGATGCAATCACATATCTAGGACTTCTGTCATCGTGCAGACACGCA 1019
Query 1024 GGTCTTGTAAAAGAAGGAAGAAAGTTCTTCAATTTGATGGCGGAACACGGCCTGAAACCA 1083
|||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 1020 GGTCTTGTAATAGAAGGAAGAAAGTTCTTCAACTTGATGGCAGAACGCGGCCTGAAACCA 1079
Query 1084 GAACTCAACCATTACTCTTGTCTAGTCGATCTTCTCGGGAGATTTGGTCTGTTGCAAGAA 1143
||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1080 GAACTCAACCACTACTCTTGTCTGGTCGATCTTCTTGGCAGATTTGGTCTGTTGCAAGAA 1139
Query 1144 GCCCTGGAACTGATCGAGAACATGCCAATGAAACCAAACTCAGTCATATGGGGATCTCTG 1203
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 GCCCTGGAACTGATAGAGAACATGCCAATGAAACCAAACTCAGTCATATGGGGATCCCTG 1199
Query 1204 CTATTCTCTTGCCGTGTTCACGGCGATGTCTGGACCGGAATCAGAGCTGCAGAGGAACGA 1263
|| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 CTTTTTTCTTGCCGTGTGCACGGCGATGTCTGGATGGGAATCAGAGCTGCAGAGGAACGG 1259
Query 1264 CTAATGCTTGAACCTGATTGCGCAGCCACGCATGTCCAGCTGGCAAATCTTTACGCCAGT 1323
| || ||||||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 1260 TTGATTCTTGAACCTGAATGTGCAGCCACACATGTCCAGCTGGCGAATCTTTACGCCAGT 1319
Query 1324 GTAGGGTACTGGAAAGAAGCGGCGACAGTGAGGAAGCTGATGAAAGATAAAGGACTGAAG 1383
|| || ||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 1320 GTCGGCTACTGGAAAGAGGCGGCGATAGTGAGGAAACTGATGAAAGATAAAGGACTGAGG 1379
Query 1384 ACGAATCCGGGTTGCAGTTGGATCGAGATCAATAACTA-TGTTTTCATGTTTAAAGCTGA 1442
|||||||| ||||| |||||||||||||||||||| || | |||| ||||||||||||||
Sbjct 1380 ACGAATCCAGGTTGTAGTTGGATCGAGATCAATAA-TAATATTTTTATGTTTAAAGCTGA 1438
Query 1443 AGATGGTAGCAACTGTAGAATGCTAGAGATTGTTCATGTTCTTCATTGTCTCATTGATCA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1439 AGATGGTAGCAACTGTAGAATGCTAGAGATTGTTCATGTTCTTCATTGTCTAATTGATCA 1498
Query 1503 CATGGAGTTCCTCTAATATTCAGGGTTCTCTCTCATTAGTTTTATAGTGCATACCAGATC 1562
||||||||||||||||||| | | | ||||||||||||||| ||||||||||
Sbjct 1499 CATGGAGTTCCTCTAATAT-C----T-C------ATTAGTTTTATAGTGTATACCAGATC 1546
Query 1563 CAGATCTTTT 1572
|| |||||||
Sbjct 1547 CATATCTTTT 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5