BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37330.1
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934384 jgi|Araly1|934384|scaffold_402372.1 1367 0.0
> Ahg934384 jgi|Araly1|934384|scaffold_402372.1
Length=862
Score = 1367 bits (740), Expect = 0.0
Identities = 811/846 (96%), Gaps = 2/846 (0%)
Strand=Plus/Plus
Query 45 ACAGAGACATGGATCTGAAATGGGATGATTTTTTCAACGATTACGAATGGCTGATCGTGT 104
||||||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 13 ACAGAGAGATGGATCTGTATTGGGAAGATTTTTTCAAGGATTACGAATGGCTGATCGTGT 72
Query 105 TTCTGAAAGGTATGGTGAAGCCAGCGGCGGCGCTCGTGGTGGTGCTTTTGGCGGTGATTC 164
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 73 TTCTGAAAGGTATGGTGAAGCCTGCGGCGGCGCTCGTGGTGGTGCTTTTGGCGGTGGTTC 132
Query 165 TTTCATACTCGCAGAACCTATCTTTGGAAGGAGAAATGATATACTCTGTTTCCCGATCGT 224
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 133 TTTCATACTCGCAGAACCTCTCTTTGGAAGGAGAAATGATATACTCTGTTTTCCGATCGT 192
Query 225 TTCTTCAACTCTCTGTTATCGGATTTGTTCTTCAGTTCATCTTTAACCAAGAGAACTCAG 284
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 193 TTCTTCAGCTCTCTGTTATCGGATTTGTTCTTCAATTCATCTTTAACCAAGAGAACGCCG 252
Query 285 GCTGGATCATCCTTGCGTATCTCTTCATGGTCTCTGTCGCCGGTTACACTGCCGGACAAC 344
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GCTGGATCGTCCTCGCTTATCTCTTCATGGTCTCTGTCGCCGGTTACACTGCCGGACAAC 312
Query 345 GTGCGAGGCACGTGCCACGTGGAAAGTACGTGGCCGGATTATCGATCCTTGCCGGGACTT 404
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GTGCGAAGCACGTGCCACGAGGAAAGTACGTGGCCGGATTATCGATCCTTGCCGGGACTT 372
Query 405 CAATTACAATG-TTCTTGCTCGTCCTCCTCAACGTCTTTCCTTTCACTCCGAGGTATATG 463
|||| |||||| || ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 373 CAATCACAATGATT-TTGCTCGTCGTCCTCAACGTTTTTCCTTTCACTCCGAGGTATATG 431
Query 464 ATCCCAATCGCCGGAATGTTGGTCGGAAATGCCATGACCGTCACCGGAGTTACCATGAAA 523
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 432 ATCCCAATCGCCGGAATGTTGGTCGGAAACGCCATGACGGTCACCGGAGTTACCATGAAA 491
Query 524 CAGCTTCGAGATGACATCAAAATGCAACTCAACCTGGTGGAGACGGCATTGGCACTAGGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CAGCTTCGAGATGACATCAAAATGCAACTCAACCTGGTGGAGACGGCATTGGCACTAGGA 551
Query 584 GCAACGCCAAGACAAGCGACGTTGCAACAGGTGAAGAGAGCACTAGTGATCTCTCTGTCT 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 552 GCAACGCCAAGACAAGCGACGTTGCAACAGGTGAAGAGAGCACTAGTGATCTCTCTATCT 611
Query 644 CCGGTTTTAGATAGCTGCAAAACCGTTGGATTGATCTCTCTACCAGGCGCAATGACTGGT 703
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 612 CCGGTTTTGGATAGCTGCAAAACCGTTGGATTGATCTCTCTACCAGGCGCAATGACCGGT 671
Query 704 ATGATAATGGGCGGGGCGTCGCCTCTAGAAGCTATTCAGCTTCAGATAGTAGTCATGAAC 763
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 672 ATGATAATGGGCGGTGCGTCGCCTCTTGAAGCTATTCAGCTTCAGATCGTAGTCATGAAC 731
Query 764 ATGATGGTAGGAGCAGCTACGGTTAGTAGCATCACGTCTACTTATCTTTGTTGGCCATCT 823
|||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 732 ATGATGGTTGGAGCAGCAACAGTTAGTAGCATCACGTCTACGTATCTTTGTTGGCCATCT 791
Query 824 TTCTTCACTAAAGCTTACCAGTTACAAACTCATGTCTTCTCCTCAGATTGAAACTTTTAT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TTCTTCACTAAAGCTTACCAGTTACAAACTCATGTCTTCTCCTCAGATTGAAACTTTTAT 851
Query 884 AAATCC 889
||||||
Sbjct 852 AAATCC 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32938200288
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5