BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37370.1
Length=2339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321443 jgi|Araly1|321443|fgenesh1_pm.C_scaffold_4001500 3275 0.0
> Ahg321443 jgi|Araly1|321443|fgenesh1_pm.C_scaffold_4001500
Length=2028
Score = 3275 bits (1773), Expect = 0.0
Identities = 1948/2030 (96%), Gaps = 22/2030 (1%)
Strand=Plus/Plus
Query 159 ATGTCGTGGTTGAGATCGGCGGTGAACAAAGCAGTTGAAGTCGGCGGGAAGAACAATATC 218
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCGTGGTTGAGATCGGCGGTGAACAAAGCAGTAGAAGTCGGCGGGAAGAACAATATC 60
Query 219 ACCCGCACCGTTCGCAATTACGCTGATTCCGTCGTCCTTACCGCCGGCAATGCCGTTTCC 278
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ACCCGCACCGTTCGCAATTACGCTGATTCCGTCGTGCTTACCGCCGGCAATGCCGTTTCC 120
Query 279 GAAGGCGCCAAACTCATCCAGGATCGCATCGGATCGAGGAATGTGAAGAGCTTTAGTCTC 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGGCGCCAAACTCATCCAGGATCGCATCGGATCGAGGAATGTGAAGAGCTTTAGTCTC 180
Query 339 GCGGTGAAGAGATTAGAAGAGGTTTCGGTTTCTTCAAGAGGAAGCGAGAGAGTGCAGTTG 398
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 181 GCGGTGAAGAGATTAGAAGAGGTTTCGGTTTCTTCGAGAGGCGGCGAGAGAGTGCAGTTG 240
Query 399 TTGAGGAGATGGCTTGTTGCTTTGAGAGAGATTGAGAGGATGTCTTATTCTTGTTTCGAC 458
||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 241 TTGAGAAGATGGCTTGTTGCTTTGAAAGAGATTGAGAGAATGTCTTATTCTTGTTTCGAC 300
Query 459 AATAACAATCACAAAACCGATGATCATACTC-A----A-TC--------C-GAAGATTCT 503
|||||||||||||||||||||||||||| || | | || | ||||||||
Sbjct 301 AATAACAATCACAAAACCGATGATCATAATCAACCTTATTCAGAAGAAGCTAAAGATTCT 360
Query 504 CCTAAAAACTTCAGTACCGTTTATTACGTTGATCCTGGTCTTCCCGGTGAGCCAATGACT 563
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTAAAAACTTCAGCACCGTTTATTACGTTGATCCTGGTCTTCCCGGTGAGCCAATGACT 420
Query 564 TTTCGTGATGTGTTTCTTCATAGTGAGGCACTTGAAGGGATGGTCTTGTCTATGATTTTG 623
|| || ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 421 TTCCGCGATGTGTTTCTTCATAGCGAGGCGCTTGAAGGGATGGTGTTGTCTATGATTTTG 480
Query 624 GAAGCACCCAATGAGGAAGAAGTCCAGCTGCTTTTGGAACTATTTGGGCTCTGTTTGTCA 683
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GAAGCACCCAATGAGGAAGAAGTCCAGCTGCTTTTGGAACTGTTTGGGCTCTGTTTGTCA 540
Query 684 GGAGAGAAGGAAGTTCATGAAGCAGTGATTCAAAATGTGCAGGACTTAGCAACT-GTGTT 742
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 541 GGAGAGAAGGAAGTTCATGAAGCAGTGATTCAAAATGTGCAGGACTTAGCAA-TGGTGTT 599
Query 743 TTTGAAATACAAAGATGAAGTTCTGGCAAAGCGCGAGGAACTGCTTCAATATGTCCAAGG 802
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCGAAATACAAGGATGAAGTTCTGGCAAAGCGCGAGGAACTGCTTCAATATGTCCAAGG 659
Query 803 TGCTATTGGAGGGTTAAAATTGAGTGCTGATATTGCAAGAATAGATATTGAAGCACATAC 862
||||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||
Sbjct 660 TGCTATTGGAGGGTTAAAAATCAGTGCTGATCTTGCAAGAATAGATATTGAAGCCCATAG 719
Query 863 TCTGATGGAGAAACTAGATAAGACTAAGGTCAAGGTTCTCGAGCATGCTTCAAGTGAAGA 922
||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 720 TCTGATGGAGAAACTCGATAAGACAAAAGTCAAGGTTCTCGAGCATGCTTCAAATGAAGA 779
Query 923 TGCTTCAAAAACTGCTGCATCAACAGAGGCTCTCCGGGAAATTCTTGAGCAAGTTCGCAC 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCTTCAAAAACTGCTGCATCAACAGAGGCTCTCCGGGAAATTCTTGAGCAAGTTCGCAC 839
Query 983 TTTTTCAAAGCTAGAAGCACTCTTGCTTAGGAAAAAATCATTACACAATGGTGATACCCT 1042
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 840 TTTTTCAAAACTAGAAGCACTCTTGCTTAGGAAAAAATCATTACGCAATGGTGATTCCCT 899
Query 1043 TCAACGCCACATTGAGAAGGTCGATAAACTGAAAGTTCTATCAGAATCCTTACTCAATTC 1102
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 TCAACGCCACAGTGAGAAGGTCGATAAACTGAAAGTTCTGTCAGAATCCTTACTCAATTC 959
Query 1103 CACCTCGAAAGCCGAAAAGCGAATCA-TGGATCAT---AGAAGCCAAAAAGAAGAAGCTC 1158
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 960 TACCTCGAAAGCCGAAAAGCGAAT-AGTGGATCATAGCAGAAGCCAAAAAGAAGAAGCTC 1018
Query 1159 TAAGCTACCGAGTTTCTAAAACTACTGAAGTTGGTCAGCTGGAGAAGGATGTAGCTGCAG 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TAAGCTACCGAGTTTCTAAAACTACTGAAGTTGGTCAGCTGGAGAAGGATGTAGCTGCAG 1078
Query 1219 AATTaaaaaaaCTTGAGATTTTGAAGGAAGATCTTGAAGCTGAGCTGAAAAGGGTCAACA 1278
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1079 AATTAAAAAAACTTGAGATTTTGAAGGATGATCTTGAAGCTGAGCTGAAAAGGGTCAACA 1138
Query 1279 CCTCAATAACATCTGCCCGGGCTCGCCTTCGCAATGCTCAAGAAGAAAGAGAGCAGTTTG 1338
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1139 CCTCAATAACATCTGCCCGGGCTCGCCTTCGCAATGCCCAAGAAGAAAGAGAGCAGTTCG 1198
Query 1339 ATAATGCGAGTAACGAAATTCTTATGCACCTGAAGTCAAAGGAAGAAGAGCTGACTCGTT 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATAATGCGAGTAACGAAATTCTTATGCACCTGAAGTCAAAGGAAGAAGAGCTGACTCGTT 1258
Query 1399 CGATAACTTCATGCCGAGTAGAGGCAGATGTTGTAAATAAGTGGATCAAATTTTTGGAAG 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGATAACTTCATGCCGAGTAGAGGCAGATGTTGTAAATAAGTGGATCAAATTTTTGGAAG 1318
Query 1459 ATACATGGATTCTCCAGTCTAAATTTTCTCAACAAAAGGATAACCAAGTTAGTGGTGAGA 1518
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1319 ATACCTGGATTCTCCAGTCTAAATTTTCTCAACAAAAGGAAAACCAAGTGAGTGGTGAGA 1378
Query 1519 TGGAGAGATATAGTGACCATTTCATCGACCTGATTGTTCAACTCCTATCTTTCTACAAGG 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TGGAGAGATATAGTGACCATTTCATCGACCTGATTGTTCAACTCCTATCTTTCTACAAGG 1438
Query 1579 AACAATTGGATCCATATATACCGAAAATCCGAGGAGTCGTGGCAAGTTTGGAACCAAGTA 1638
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1439 AACAATTGGATCCATATATACCGAAAATCCGAGGAGTCGTGGAAAGTTTGGAACCAAGTA 1498
Query 1639 AAGGGTTAGAAGCCGAGAAAATCATAGACAACAAGGATACAAAGCCATTTGAATCTAGAA 1698
||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1499 AAGGGTTAGAAGCAGAGAAAATCACAGACAACAAGGATACAAAGCCATTTGATTCTAGAA 1558
Query 1699 AACAGCTTGAGAAGGAGTATTTGGACCTCGAAGCTAAGTTTGTAACAACATTAAGTGTGG 1758
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AACAGCTTGAGAAGGAGTATCTGGACCTCGAAGCTAAGTTTGTAACAACATTAAGTGTGG 1618
Query 1759 TGGATGCAATGAAAAAGCCATTCTATTCACAAACAGAAGGAATCTCCAGGAAAGACGATA 1818
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1619 TGGATGCGATGAAAAAGCCATTCTATTCACAAACAGAAGGTATCTCCAGGAAAGACGATA 1678
Query 1819 AAAGAGTGAAAGAACTATTTGAGGTATTGGACAAAACAAAACAAGAGTTTGAGGCTATCG 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 AAAGAGTGAAAGAACTATTTGAGGTATTGGACAAAACAAAACAAGAGTTTGAGGCTATCG 1738
Query 1879 AACGCCCGCTTCTAGATATTGAGTCTCCTTCTAGAACCTCATCGTCTTCACGCTCACCGT 1938
||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1739 AACGCCCGCTTTTGGATATTGAGTCTCCTTCTAGAACCTCATCATCTTCACGCTCACCGT 1798
Query 1939 CCTTGAAAATGACTCATGAGACTCCACTTTCCGATACAGTCCTGAAACTTTCCGGTGGTG 1998
|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1799 CCCTGAAAATGACGCATGAGACTCCACTTACCGATACAGTCCTGAAACTTTCCGGTAATG 1858
Query 1999 ATGATTCACCAGACAGTAAAAAAGGGTCTTCAGGGAAGGAAGAAGACCCGGCAAAGAAAC 2058
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1859 ATGATTCACCAGACAGTAAAAAAGGGTCTTCAGAGAAGGAAGAAGACCCGGCAAAGAAAC 1918
Query 2059 AACTCGAGTTGGAACTGGACGTCGACGGAGAAGAGTTCTTGGCAGATGAAATCAATGACT 2118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AACTGGAGTTGGAACTGGACGTCGACGGAGAAGAGTTCTTGGCAGATGAAATCAATGACT 1978
Query 2119 GGGAATTCGACGCTCTTGATGAAACTCTGACCTCAAAGACAAGTAGTTGA 2168
|||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1979 GGGAATTCGACGCTCTTGATGAAACTCTCACCTCAAAAACCAGTAGTTGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88102736685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5