BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G37380.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482764 jgi|Araly1|482764|fgenesh2_kg.4__1824__AT2G37380.1 1677 0.0
Ahg482731 jgi|Araly1|482731|fgenesh2_kg.4__1791__AT2G37380.1 1666 0.0
> Ahg482764 jgi|Araly1|482764|fgenesh2_kg.4__1824__AT2G37380.1
Length=1159
Score = 1677 bits (908), Expect = 0.0
Identities = 1095/1181 (93%), Gaps = 30/1181 (3%)
Strand=Plus/Plus
Query 67 agacatGGATTTGCATGAATCAGAATCAAGAACACATGTTCTGTCCACCGATGGTGATGA 126
||||| ||| ||| | |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 3 AGACAGGGA-TTGGAGGAATCAGAATCAAGAACACATGTTTTGTCCAACGATGGTGATGA 61
Query 127 T-GGTTACATAGACATGGAAGTCAAtctctcttcttcttcttcttcttctacttcgtcct 185
| ||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 62 TGGGTTACATAGACATGGAAGTCAA----TC-TC-TCTTCTTCTTCTTCTACTTCTTCCT 115
Query 186 caagcttcttcagcttccccgtcacttcCTCCCCGCCGCAAAGCAGAGAGTTCGAGTTTC 245
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 116 CAAGCTTCTTCAGCTTCCCCGTCACTTCCTCGCCGCCGCAAAGCAGAGAGTTCGAGTTTC 175
Query 246 AAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACCACATCTCCGGCTGATGAGCTTT 305
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 176 AAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACGACATCTCCGGCCGATGAGCTTT 235
Query 306 TCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGGTACAAAAGC 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGGTACAAAAGC 295
Query 366 TTCTTCTCGCTTCCTCCTCCTCCACCGCCGCAACGGAAACTCCTATCTCCCCACGCGCCG 425
|||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 296 TTCTTCTCGCTTCCTCCTCC---ACCGCCGCAACAGAAACTCCTATTTCCCCACGCGCCA 352
Query 426 CCGCAGATGTATTGTCTCCACGGAGATTCAGTAGCTGTGAGATCGGACAAGACGAG-AAT 484
||| | || || || ||||||||||||||| |||||||||||||||||||| |||
Sbjct 353 CCG----T--ATCCTCGCCGCGGAGATTCAGTAGCAGTGAGATCGGACAAGACGAGCAAT 406
Query 485 TGTTTCTTTGAGATTTCGACAGAGCTCAAGAGATTCATCGAGAGCAACGAGAATCATCTT 544
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 407 -GTTTCTTTGAGATTTCAACAGAGCTCAAGAGATTCATTGAGAGCAACGAGAATCATCTT 465
Query 545 GGAAACAGTTGGAGCAAAAAGATCAAACATTCATCCATAACACAAAAACTCAAAGCCTCA 604
||||||||||||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 466 GGAAACAGTTGGAGCAAAAAGATCAAACATTCATCGATTACACAAAAGCTTAAAGCCTCA 525
Query 605 CGCGCTTACATAAAAGCTCTGTTCTCAAAACAAGCCTGTTCAGATTCATCAGAGATCAAT 664
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 526 CGCGCTTACATAAAAGCTCTGTTCTCAAAACAAACCTGCTCAGATTCATCAGAGATCAAT 585
Query 665 CCAAGATTCAAAATTGAACCTTCTAAAGTCTCAAGAAAGAAGAACCCATTTGTGAACAGT 724
| |||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||
Sbjct 586 CTAAGATTCAAAATTGAACCTTGTAAAGTCTCAAGAAAGAAGAACCCTTTTATAAACAGT 645
Query 725 GAGAATCCTCTGTTAATTCATAGGAGATCTTTCTCTGGTGTGATACAGAGACATTCTCAA 784
|| || |||| || ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 646 GAAAAACCTCAATTGTTTCATAGAAGATCCTTCTCTGGTGTGATACAGAGACATTCTCAA 705
Query 785 GCAAAGTGTTCAACAtcttcttcttcttcttcctctgcgtcttcgttgtcttcttcgttc 844
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 706 GCTAAGTGTTCAACATCTTCTTCTTCTTCTTCCTCTGCATCGTCGTTGTCTTCTTCGTTC 765
Query 845 AGTTTTGGATCAAACGGGTCGTTGGATCTGCAGACACTGATGAGAAGCAGCAATGCGAGT 904
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 766 AGTTTTGGATCAAACGGGTCTTTGGATCTGCAGACACTGATGAGAAGCAGCAACGCGAGT 825
Query 905 GATAACTCCATTGAAGGAGCGATCGAGCATTGTAAGCAGTCGTTTACTACTAGGAAGAGT 964
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 826 GATAACTCCATTGAAGGAGCGATTGAGCATTGTAAGCAGTCGTTTACTAGTAGGAAGAGC 885
Query 965 AATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGTGGTGACCTT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 AATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGTGGTGACCTT 945
Query 1025 GATAAAGATTGAGATTCTCAGATCTGTGACGctctctctctctGATTC-CATTCCAAAAG 1083
|| ||||||||| |||||||||||||||| || |||||| ||||| |||||||||||
Sbjct 946 GAAAAAGATTGAAATTCTCAGATCTGTGAAGCGCTCTCT----GATTCTCATTCCAAAAG 1001
Query 1084 GATACaaaaaaaaaatacataaaaagt--tcaaaaaGATAACTTTT-TCTTCTACTCTGA 1140
||||||||||||||| | | ||||| | | ||||||||||||||| |||||||||||||
Sbjct 1002 GATACAAAAAAAAAAAAAA-AAAAA-TCATAAAAAAGATAACTTTTCTCTTCTACTCTGA 1059
Query 1141 tttttttatttttGTAATTTAGATTCTTTTGTGTGCTTTTGTTGTAGAAGTTTGCTGAAT 1200
|||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1060 TTTTTTTACTTTTGTATTTTAGATTCTTTTGTGTGCTTTTGTT-TAGAAGTTTGCTGAAT 1118
Query 1201 TCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACAAAA 1241
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1119 TCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACCAAA 1159
> Ahg482731 jgi|Araly1|482731|fgenesh2_kg.4__1791__AT2G37380.1
Length=1205
Score = 1666 bits (902), Expect = 0.0
Identities = 1141/1248 (91%), Gaps = 50/1248 (4%)
Strand=Plus/Plus
Query 1 AAGTAAACcacagagagaaaatatatac--a--cagacagatacatacacacaattacat 56
||||||||||||||||| |||||||||| | |||||||||||| |||| |||||||
Sbjct 1 AAGTAAACCACAGAGAG-AAATATATACAAATTAAGACAGATACAT--ACACTATTACAT 57
Query 57 acatagagaaagacatGGATTTGCATGAATCAGAATCAAGAACACATGTTCTGTCCACCG 116
|||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 58 ACATAGAG--AGACATGGATTTGCATGAATCAGAATCACGAACACATGTTTTGTCCAACG 115
Query 117 ATGGTGATGATGGTTACATAGACATGGAAGTCAAtctctcttcttcttcttcttcttcta 176
| ||||||||||||||||||||| | ||||||||||||||||| | |||||||| | |
Sbjct 116 ACGGTGATGATGGTTACATAGACTTAGAAGTCAATCTCTCTTC--C-TCTTCTTC-T-T- 169
Query 177 cttcgtcctcaagcttcttcagcttccccgtcacttcCTCCCCGCCGCAAAGCAGAGAGT 236
| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 170 C--C-TCCTCAAGCTTCTTCAGCTTCCCCGTCACTTCCTCGCCGCCGCAAAGCAGAGAGT 226
Query 237 TCGAGTTTCAAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACCACATCTCCGGCTG 296
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 227 TCGAGTTTCAAATGTGTTCCTCCGCCGTAGCTTCCGGTGAATCAACGACATCTCCGGCCG 286
Query 297 ATGAGCTTTTCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 ATGAGCTTTTCTACAAAGGTCAACTTCTTCCTCTTCATCTCCCTCCTCGTCTCAAAATGG 346
Query 357 TACAAAAGCTTCTTCTCGCTTCCTCCTCCTCCACCGCCGCAACGGAAACTCCTATCTCCC 416
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 347 TACAAAAGCTTCTTCTCGCTTCCTCCTCC---ACCGCCGCAACAGAAACTCCTATTTCCC 403
Query 417 CACGCGCCGCCGCAGATGTATTGTCTCCACGGAGATTCAGTAGCTGTGAGATCGGACAAG 476
|||||||| ||| | || || || ||||||||||||||| |||||||||||||||
Sbjct 404 CACGCGCCACCG----T--ATCCTCGCCGCGGAGATTCAGTAGCAGTGAGATCGGACAAG 457
Query 477 ACGAG-AATTGTTTCTTTGAGATTTCGACAGAGCTCAAGAGATTCATCGAGAGCAACGAG 535
||||| ||| |||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 458 ACGAGCAAT-GTTTCTTTGAGATTTCAACAGAGCTCAAGAGATTCATTGAGAGCAGCGAG 516
Query 536 AATCATCTTGGAAACAGTTGGAGCAAAAAGATCAAACATTCATCCATAACACAAAAACTC 595
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 517 AATCATCTTGGAAACAGTTGGAGCAAAAAGATCAAACATTCATCGATTACACAAAAGCTT 576
Query 596 AAAGCCTCACGCGCTTACATAAAAGCTCTGTTCTCAAAACAAGCCTGTTCAGATTCATCA 655
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 577 AAAGCCTCACGCGCTTACATAAAAGCTCTGTTCTCAAAACAAACCTGCTCAGATTCATCA 636
Query 656 GAGATCAATCCAAGATTCAAAATTGAACCTTCTAAAGTCTCAAGAAAGAAGAACCCATTT 715
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 637 GAGATCAATCTAAGATTCAAAATTGAACCTTGTAAAGTCTCAAGAAAGAAGAACCCTTTT 696
Query 716 GTGAACAGTGAGAATCCTCTGTTAATTCATAGGAGATCTTTCTCTGGTGTGATACAGAGA 775
| |||||||| || |||| || ||||||| ||||| |||||||||||||||||||||
Sbjct 697 ATAAACAGTGAAAAACCTCAATTGTTTCATAGAAGATCCTTCTCTGGTGTGATACAGAGA 756
Query 776 CATTCTCAAGCAAAGTGTTCAACAtcttcttcttcttcttcctctgcgtcttcgttgtct 835
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 757 CATTCTCAAGCTAAGTGTTCAACATCTTCTTCTTCTTCTTCCTCTGCATCGTCGTTGTCT 816
Query 836 tcttcgttcAGTTTTGGATCAAACGGGTCGTTGGATCTGCAGACACTGATGAGAAGCAGC 895
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 817 TCTTCGTTCAGTTTTGGATCAAACGGGTCTTTGGATCTGCAGACACTGATGAGAAGCAGC 876
Query 896 AATGCGAGTGATAACTCCATTGAAGGAGCGATCGAGCATTGTAAGCAGTCGTTTACTACT 955
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 877 AACGCGAGTGATAACTCCATTGAAGGAGCGATTGAGCATTGTAAGCAGTCGTTTACTAGT 936
Query 956 AGGAAGAGTAATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGT 1015
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AGGAAGAGCAATGTGACTGAATCTGAGCTCTGTTCTTCAAGAACCTCTGTTTCTACTTGT 996
Query 1016 GGTGACCTTGATAAAGATTGAGATTCTCAGATCTGTGACGctctctctctctGATTC-CA 1074
||||||||||| ||||||||| |||||||||||||||| || |||||| ||||| ||
Sbjct 997 GGTGACCTTGAAAAAGATTGAAATTCTCAGATCTGTGAAGCGCTCTCT----GATTCTCA 1052
Query 1075 TTCCAAAAGGATACaaaaaaaaaatacataaaaagttcaaaaaGATAACTTTT-TCTTCT 1133
|||||||||||||||||||||||| | | ||| | | |||||||| ||||||
Sbjct 1053 TTCCAAAAGGATACAAAAAAAAAA-A-A-AAA--G---A------TAACTTTTCTCTTCT 1098
Query 1134 ACTCTGAtttttttatttttGTAATTTAGATTCTTTTGTGTGCTTTTGTTGTAGAAGTTT 1193
||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1099 ACTCTGATTTTTTTACTTTTGTATTTTAGATTATTTTGTGTGCTTTTGTT-TAGAAGTTT 1157
Query 1194 GCTGAATTCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACAAAA 1241
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1158 GCTGAATTCGAGGTTTCTTTATGTGTTATAAATGTTAATGCTACCAAA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5